Adapters

FASTA To Sequence

Parses plain-text UTF-8 FASTA research data artifact rows into research data artifact rows.

Runnablesequence data

Catalog entry

About this entry

Parses plain-text UTF-8 FASTA research data artifact rows into research data artifact rows. The certified local adapter supports multi-record and multi-line FASTA, preserves header text as the sequence id, normalizes sequence text to uppercase, infers dna/rna/protein from filename or format hints and certified IUPAC alphabets, and fails closed on malformed input.

CategoryAdapters
StatusRunnable
InputFlexible research data
Outputsequence data

Use in DarwinOmics

How to use it

Use this entry from the DarwinOmics catalog when it matches the data and analysis path.