DarwinOmics.ai

Result views, plots, reports, and interactive inspection surfaces

Visualizations

Volcano plots, heatmaps, UMAP/PCA/t-SNE, genome views, protein and molecule viewers, networks, dashboards, quality reports, and comparison visualizations regenerated from supplied analysis artifacts.

VolcanoHeatmapPCAUMAPGenome browser3D structure
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216Visualizations available

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3d Structure Viewer Deterministic interactive HTML atom viewer for supplied PDB ATOM/HETATM coordinates. Visualizations Runnable Visualization ACMG Evidence Scorecard ACMG Evidence Scorecard regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Admixture Plot Admixture Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Alignment Stats Deterministic SVG alignment statistics report for supplied research data artifact rows. Visualizations Runnable aligned sequencing reads Alignment Viewer Deterministic local HTML/SVG alignment viewer for supplied research data artifact rows. Visualizations Runnable aligned sequencing reads Allele Frequency Plot Deterministic SVG rendering of supplied explicit allele-frequency values from research data artifact rows. Visualizations Runnable Visualization Alpha Diversity Alpha Diversity regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization AMR Dashboard AMR Dashboard regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization AMR Table AMR Table regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Antigen Structure View Antigen Structure View applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Visualizations Runnable Visualization Atac Footprint Plot Atac Footprint Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable aligned sequencing reads Bar Plot Bar Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Benchmarking Dashboard Benchmarking Dashboard regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Beta Diversity Beta Diversity regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Bioactive Compound Plot Bioactive Compound Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Box Plot Builds a deterministic SVG box plot from finite numeric research data artifact values, with grouped five-number summaries and explicit provenance/limitations. Visualizations Runnable Visualization Brain Connectome Viewer Brain Connectome Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Btrack Btrack provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Candidate Report Pack Candidate Report Pack regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Cbioportal Cbioportal regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Cell Browser Deterministic local HTML browser for supplied research data artifact rows containing single-cell JSON records. Visualizations Runnable Visualization Cell Cycle Plot Cell Cycle Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Cell Selector Cell Selector renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Visualizations Runnable Visualization Cell Type Bar Cell Type Bar regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Circos Interactive Circos Interactive regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Circos Plot Circos Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Clinical Report Summary Clinical Report Summary regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Clonotype Plot Clonotype Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Cluster Marker Heatmap Cluster Marker Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization CNV Heatmap CNV Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization CNV Plot CNV Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Comparison Summary Comparison Summary regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization ComplexHeatmap ComplexHeatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization Confidence Plot Confidence Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Consensus Viewer Consensus Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Contact Map Contact Map regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Contact Map Protein Contact Map Protein applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Visualizations Runnable Visualization Copy Number Plot Copy number segments across chromosomes. Visualizations Runnable Visualization Correlation Heatmap Correlation Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization Countdown Plot Deterministic local ranked count visualization for supplied research data artifact rows. Visualizations Runnable expression matrices Coverage Histogram Coverage Histogram regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Coverage Plot Coverage Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Cytoscapejs Cytoscapejs regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization cytoscape/cytoscape.js | 11,069 stars Darwinomics Cgt Executive Readout Report Builds executive readout report rows from regulatory package evidence and validation findings. Visualizations Available Visualization Darwinomics Doc Contract Diff Reviewer doc analysis element diff reviewer Visualizations Runnable Visualization Darwinomics Paper Figure Deplot Native Rust paper-figure chart-to-table extractor for replication validation. Reads a single paper figure asset, emits structured panel targets with heatmap/table-oriented evidence, and stays inside DarwinOmics research data artifact... Visualizations Available Visualization Darwinomics Paper Figure Plot Reader Local Rust paper-figure reader for replication validation. Finds researcher-submitted OCR/images and public PMC figures, runs native research data artifact paper-figure parser modules plus the generic vision fallback, and emits structured... Visualizations Catalog Visualization Darwinomics Validation Public Analysis Plots Deterministic reviewer-facing plot-spec surface for DarwinOmics public validation analysis pages. Visualizations Runnable Visualization Darwinomics Validation Reviewer Summary Deterministic reviewer-facing validation summary for DarwinOmics reports. Visualizations Runnable Visualization Data Table Data Table regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Degs Table Degs Table regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Density Plot Deterministic SVG density plot renderer for grouped finite numeric research data artifact values. Visualizations Runnable Visualization Design Program Graph Design Program Graph regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Diversity Plot Diversity Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Docking Pose Docking Pose supports molecular design or docking analysis with structured inputs, scored outputs, and provenance for review. Visualizations Runnable Visualization Document Contract Evidence viz document analysis element evidence Visualizations Runnable Visualization Dot Plot Renders supplied finite long-form matrix values and fractions as a deterministic SVG dot plot with value color and fraction radius encodings. Visualizations Runnable Visualization Doublet Plot Doublet scores in single-cell data. Visualizations Runnable Visualization Drug Gene Interaction Plot Drug Gene Interaction Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Drug Response Curve Drug Response Curve supports molecular design or docking analysis with structured inputs, scored outputs, and provenance for review. Visualizations Runnable Visualization Drug Target Network Drug Target Network supports molecular design or docking analysis with structured inputs, scored outputs, and provenance for review. Visualizations Runnable Visualization Duplicates Plot Duplicates Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Embedding UMAP Embedding UMAP renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Visualizations Runnable Visualization lmcinnes/umap | 8,216 stars Enformer Track Viewer Enformer Track Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Enrichment Bar Renders supplied finite enrichment/category scores as a deterministic SVG bar chart with provenance and no statistical recomputation. Visualizations Runnable Visualization Enrichment Bar Chart Enrichment Bar Chart regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Enrichment Barplot Enrichment Barplot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Enrichment Dotplot Enrichment Dotplot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Epiviz Epiviz regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Expression Atlas Deterministic local HTML expression atlas for supplied research data artifact rows. Visualizations Runnable expression matrices Flashpca2 Flashpca2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Visualizations Runnable expression matrices Flow Cytometry Viewer Deterministic local SVG viewer for supplied flow cytometry event rows. Visualizations Runnable Visualization Forest Plot Forest plot renderer for finite effect estimates and confidence intervals in research data artifact rows. Visualizations Runnable Visualization Fragment Size Plot Fragment Size Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Fusion Gene Plot Fusion Gene Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization GATK Haplotype Caller GATK HaplotypeCaller calls germline SNPs and indels. Gold standard for germline variant calling. Requires aligned BAM and indexed reference genome. Visualizations Runnable aligned sequencing reads broadinstitute/gatk | 1,970 stars Gc Bias Plot GC content bias in sequencing data. Visualizations Runnable Visualization Gene Bar Gene Bar regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Gene Bar Plot Gene Bar Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Gene Structure Plot Gene Structure Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Genome Browser Genome Browser provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Genome Browser Interactive IGV-like genome browser with zoom, pan, click. Visualizations Runnable Visualization Genome Browser Track Interactive genome browser showing aligned reads, peaks, or variants along a genomic region. Supports zoom, pan, and click. Visualizations Runnable Visualization Go Enrichment Go Enrichment regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Gosling Gosling regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Gsea Plot Renders supplied finite running enrichment scores, hit positions, and ranked signal as deterministic SVG GSEA-style plots without recomputing gene-set statistics. Visualizations Runnable Visualization Heatmap Color-coded matrix showing gene expression across samples. Rows are genes, columns are samples, colors represent expression levels. Visualizations Runnable Visualization Heatmap Interactive Heatmap with zoom and cluster selection. Visualizations Runnable Visualization Higlass Higlass regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable expression matrices HPO Network Viewer HPO Network Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Igvjs Igvjs supports variant calling, normalization, or annotation so genomic findings can be reproduced from the supplied evidence. Visualizations Runnable variant calls igvteam/igv.js | 725 stars Image Viewer Image Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Infrastructure Cost Dashboard Infrastructure Cost Dashboard applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Visualizations Runnable Visualization Insert Size Plot Insert size distribution for paired-end data. Visualizations Runnable Visualization Isoform Viewer Isoform Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Jbrowse2 Jbrowse2 regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization GMOD/jbrowse-components | 286 stars Junction Plot Junction Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Karyotype Plot Karyotype Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Ligand Receptor Plot Ligand Receptor Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Line Plot Line Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Lineage Tree Lineage Tree regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Lineage Tree Plot Lineage Tree Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Live Cell Tracking Live Cell Tracking provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Lollipop Plot Lollipop Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Ma Plot Shows log fold change vs average expression for each gene. Better than volcano plot for showing expression-dependent biases. Visualizations Runnable Visualization Mag Quality Plot Mag Quality Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable sequencing reads Manhattan Manhattan turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Manhattan Plot Manhattan Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Mass Spec Viewer Deterministic mass spectrum visualization for supplied research data artifact m/z-intensity peak records. Visualizations Runnable Visualization Methylation Heatmap Methylation Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable aligned sequencing reads Mirna Target Network Mirna Target Network regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization MOFA Factor Plot MOFA Factor Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Molstar Molstar handles read alignment or aligned-read processing with captured inputs, parameters, and output artifacts for reproducibility review. Visualizations Runnable Visualization molstar/molstar | 972 stars Motif Enrichment Plot Motif Enrichment Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization MS2 Spectra Viewer MS2 Spectra Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Multi Omics Circos Multi Omics Circos regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Multi Omics Viewer Deterministic local SVG linked view for supplied research data artifact multiome feature rows. Visualizations Runnable Visualization Mutation Landscape Mutation Landscape regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Mutation Signature Panel Mutation Signature Panel regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Nano Volcano Plot Nano Volcano Plot renders volcano plots from differential-analysis statistics, making effect size and significance patterns inspectable in the validation report. Visualizations Runnable Visualization NanoPlot NanoPlot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Nanopore Modification Track Nanopore Modification Track provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Network Explorer Deterministic network visualization for supplied research data artifact node and edge records. Visualizations Runnable Visualization Nucleus Viewer Nucleus Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Optimization Trace Optimization Trace regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Outbreak Dashboard Outbreak Dashboard regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Pae Heatmap Pae Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization Pair Plot Pair Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Pareto Frontier Pareto Frontier regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Pathway Mapping Pathway Mapping regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Pathway Network Pathway Network regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Pathway Viewer Pathway diagram with expression overlay. Visualizations Runnable Visualization PCA Interactive PCA Interactive renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Visualizations Runnable Visualization PCA Plot Deterministic SVG scatter plot for supplied research data artifact PCA coordinates. Visualizations Runnable Visualization Peak Count Bar Deterministic bar-chart visualization of supplied research data artifact counts grouped by chromosome index. Visualizations Runnable Visualization Peak Profile Deterministic SVG peak profile visualization of supplied research data artifact signal values at peak summits. Visualizations Runnable Visualization Peak Signal Heatmap Peak Signal Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable aligned sequencing reads Peak Viewer Deterministic SVG genomic interval viewer for supplied research data artifact rows. Visualizations Runnable Visualization Pedigree Plot Pedigree Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Perturbation Plot Perturbation Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Phylogenetic Tree Phylogenetic Tree regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Pie Chart Pie Chart regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Pipeline Summary Panel Pipeline Summary Panel regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Platform Health Monitor Platform Health Monitor regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Plotly Plotly turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization plotly/plotly.py | 18,641 stars Power Analysis Plot Power Analysis Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Protein Coverage Map Protein Coverage Map applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Visualizations Runnable Visualization Protein Coverage Plot Peptide coverage across a protein. Visualizations Runnable Visualization Proteomics QC Dashboard Proteomics QC Dashboard summarizes sequencing or run-quality metrics so reviewers can check whether preprocessing and input quality match the reported analysis. Visualizations Runnable Visualization Pseudotime Plot Pseudotime Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization QC Overview QC Overview summarizes sequencing or run-quality metrics so reviewers can check whether preprocessing and input quality match the reported analysis. Visualizations Runnable Visualization QC Report Deterministic HTML QC report visualization for supplied research data artifact rows. Visualizations Runnable sequencing reads QC Summary QC Summary summarizes sequencing or run-quality metrics so reviewers can check whether preprocessing and input quality match the reported analysis. Visualizations Runnable Visualization Qq Plot Research-certified Rust-native QQ plot visualization using R 4.5.3 stats::qqnorm(plot.it=FALSE) theoretical normal quantiles for the certified 1-10 observation scope. Visualizations Runnable Visualization Quality Strip Plot Deterministic SVG quality strip plot for supplied research data artifact rows with Phred+33 qualities. Visualizations Runnable sequencing reads Read Distribution Plot Read distribution across gene bodies. Visualizations Runnable Visualization Read Length Dist Read Length Dist regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Regional Association Plot Regional Association Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Report Viewer Report Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization RNA Modification Plot RNA Modification Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization RNA Secondary Structure RNA Secondary Structure applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Visualizations Runnable Visualization RNA Structure Viewer RNA Structure Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Sample Distance Plot Research-certified Rust-native sample distance heatmap renderer for research data artifact row_id/data distance matrices produced by R 4.5.3 stats::dist(method=euclidean). Visualizations Runnable Visualization Sankey Diagram Sankey Diagram regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Sankey Interactive Sankey Interactive regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Sashimi Plot Splice junction reads sashimi plot. Visualizations Runnable Visualization Scatter Plot Scatter Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Segmentation Overlay Segmentation Overlay processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Visualizations Runnable Visualization Sequence Constraint Heatmap Sequence Constraint Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization Spatial Cell Communication Spatial Cell Communication processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Visualizations Runnable Visualization Spatial Deconvolution Plot Spatial Deconvolution Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Spatial Gene Overlay Spatial Gene Overlay processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Visualizations Runnable Visualization Spatial Tissue Map Spatial Tissue Map processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Visualizations Runnable Visualization Spatial Viewer Spatial Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Stacked Bar Stacked Bar regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Star Allele Plot Star Allele Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization alexdobin/STAR | 2,216 stars Starsolo QC Dashboard Starsolo QC Dashboard summarizes sequencing or run-quality metrics so reviewers can check whether preprocessing and input quality match the reported analysis. Visualizations Runnable Visualization alexdobin/STAR | 2,216 stars Stats Summary Stats Summary regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Strip Plot Deterministic SVG strip plot renderer for grouped finite numeric research data artifact observations. Visualizations Runnable Visualization Structure Confidence Structure Confidence applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Visualizations Runnable protein or structure data Structure Viewer Structure Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Survival Curve Survival Curve regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Survival Plot Survival Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Synteny Plot Synteny Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Tad Browser Tad Browser provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Taxonomic Bar Plot Taxonomic Bar Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Taxonomy Bar Taxonomy Bar regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Taxonomy Sunburst Taxonomy Sunburst regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Track Stacked Track Stacked provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Trackastra Trackastra provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Trackmate Trackmate provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Trajectory Branching Plot Trajectory Branching Plot turns tabular analysis results into report-ready plots that can be checked against the figures in a submitted study. Visualizations Runnable Visualization Trajectory Viewer Trajectory Viewer provides an inspection view for genomic, image, protein, network, or tabular artifacts produced during analysis replication. Visualizations Runnable Visualization Transmission Network Transmission Network regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Tsne Interactive Deterministic interactive HTML explorer for supplied research data artifact t-SNE coordinates. Visualizations Runnable Visualization Tsne Plot Deterministic SVG scatter plot for supplied research data artifact t-SNE coordinates. Visualizations Runnable Visualization Ucsc Linkout Ucsc Linkout regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization UMAP UMAP reduces high-dimensional data to 2D or 3D for visualization. Standard for single-cell data. Preserves local and global structure better than t-SNE. Use after preprocessing and PCA to visualize cell populations. Visualizations Runnable Visualization lmcinnes/umap | 8,216 stars UMAP Interactive Deterministic interactive HTML explorer for supplied research data artifact UMAP coordinates. Visualizations Runnable Visualization lmcinnes/umap | 8,216 stars UMAP Plot Deterministic SVG scatter plot for supplied research data artifact UMAP coordinates. Visualizations Runnable Visualization lmcinnes/umap | 8,216 stars UMAP Viewer UMAP Viewer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Visualizations Runnable Visualization lmcinnes/umap | 8,216 stars Upset Plot Set intersections for >3 sets. Visualizations Runnable Visualization Variant Annotation Plot Deterministic local SVG summary for supplied research data artifact rows. Visualizations Runnable variant calls Variant Explorer Deterministic local SVG explorer for supplied research data artifact rows. Visualizations Runnable variant calls Variant Filter Variant Filter supports variant calling, normalization, or annotation so genomic findings can be reproduced from the supplied evidence. Visualizations Runnable sequencing reads Variant Score Comparison Variant Score Comparison handles read alignment or aligned-read processing with captured inputs, parameters, and output artifacts for reproducibility review. Visualizations Runnable aligned sequencing reads Variant Table Variant Table handles read alignment or aligned-read processing with captured inputs, parameters, and output artifacts for reproducibility review. Visualizations Runnable aligned sequencing reads Variant Viewer Deterministic research data artifact to SVG research data artifact renderer for variant ID, chromosome, position, alleles, quality, and filter status. Visualizations Runnable variant calls Vdj Usage Vdj Usage regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Vdj Usage Heatmap Vdj Usage Heatmap renders heatmaps from expression, feature, or tabular matrices so clustered patterns and annotations can be compared against the submitted figure. Visualizations Runnable Visualization Venn Diagram Venn Diagram regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Venn Interactive Venn Interactive regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization Violin Plot Deterministic SVG violin plot renderer for grouped finite numeric research data artifact values. Visualizations Runnable Visualization Volcano Interactive Volcano plot with hover tooltips and gene details. Visualizations Runnable Visualization Volcano Plot Displays statistical significance vs fold change for all genes in a differential expression analysis. Significantly upregulated genes appear upper right, downregulated upper left. The most common visualization for RNA-seq DE results. Visualizations Runnable Visualization Washu Linkout Washu Linkout regenerates a visual analysis output from supplied artifacts so the rendered result can be inspected against the submitted study. Visualizations Runnable Visualization