DarwinOmics.ai

Biology AI, statistical models, and predictive engines

Models

Sequence and protein language models, variant-effect predictors, structure predictors, cell and spatial models, drug-discovery models, and other ML components DarwinOmics can use to reproduce or compare computational analysis steps.

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738Models available

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Ablang Heavy Sequences Protein/nucleotide language model: AbLang (heavy sequences). From University of Oxford. Models Runnable Biology model Ablang2 Ablang2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Abricate Abricate renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Absci Unlocked Absci Unlocked renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Admet AI Admet AI renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Af Unmasked Protein structure prediction model: AF_unmasked. From Linköping University,Uppsala University,Stockholm University. Models Runnable Biology model Af2bind Af2bind renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Af2rave AI model: AF2RAVE. From University of Maryland. Models Runnable Biology model Afp Deep AI model: AFP-Deep. From Nanjing University,Yangzhou University. Models Runnable Biology model Agro Nt Agro Nt renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Aizynthfinder Aizynthfinder renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Akita Akita applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Alice AI model: ALICE. From Nanhu Brain-Computer Interface Institute,Lingang Laboratory,Medical School of Nantong University,Zhejiang University School of Medicine. Models Runnable Biology model Alphaflow Protein structure prediction model: Alphaflow. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model AlphaFold Multimer Protein structure prediction model: AlphaFold-Multimer. From Google DeepMind,DeepMind. Models Runnable protein or structure data google-deepmind/alphafold | 14,697 stars AlphaFold2 Predicts protein 3D structures from amino acid sequences with near-experimental accuracy. Uses deep learning and multiple sequence alignments. Best for high-accuracy structure prediction. Requires GPU. Models Runnable protein or structure data google-deepmind/alphafold | 14,697 stars AlphaFold3 Predicts structures of protein complexes including protein-protein, protein-DNA, and protein-RNA interactions. Extends AlphaFold2 to multiple chains. Models Runnable protein or structure data google-deepmind/alphafold3 | 8,276 stars Alphagenome Protein structure prediction model: AlphaGenome. From Google DeepMind. Models Runnable Biology model Alphalink Protein structure prediction model: AlphaLink. From Technische Universitat Berlin,Research Cluster of Excellence,University of Edinburgh. Models Runnable Biology model Alphamissense Alphamissense renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model google-deepmind/alphafold | 14,697 stars Alphamut AI model: AlphaMut. From Indian Institute of Science Education and Research. Models Runnable Biology model Alphapeptdeep Alphapeptdeep applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable Biology model Alphaproteo Alphaproteo renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Amelie Amelie renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Aminoacid 0 Protein/nucleotide language model: AminoAcid-0. From Ginkgo Bioworks. Models Runnable Biology model Aminobert Protein structure prediction model: AminoBert. From Harvard Medical School,Nabla Bio,Columbia University. Models Runnable Biology model Amplify Protein/nucleotide language model: AMPLIFY. From Chandar Research Lab,Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),Amgen,Polytechnique Montreal,CIFAR AI Research. Models Runnable Biology model Amvl Amvl renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Anarci Anarci renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ankh Base Protein/nucleotide language model: Ankh_base. From Technical University of Munich,Columbia University. Models Runnable Biology model Ankh Large Protein/nucleotide language model: Ankh_large. From Technical University of Munich,Columbia University. Models Runnable Biology model Antiformer AI model: AntiFormer. From University of Florida,Sichuan University,Shihezi University,University of Macau,University of Texas Health Science Center. Models Runnable Biology model Atomflow Protein/nucleotide language model: AtomFlow. From Peking University,Chinese University of Hong Kong (CUHK),Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal,HEC... Models Runnable Biology model Autodock GPU Autodock GPU renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Automated Design Of Multi Target Ligands By Generative Deep Learning AI model: Automated design of multi-target ligands by generative deep learning. From Goethe University Frankfurt,Fraunhofer Institute for Translational Medicine and Pharmacology,Ludwig Maximilian University of Munich. Models Runnable Biology model Badger AI model: BADGER. From NVIDIA,University of California (UC) Berkeley. Models Runnable Biology model Basenji Basenji applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Beast2 Beast2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Bert Rbp AI model: BERT-RBP. From Waseda University. Models Runnable Biology model Betterbodies AI model: BetterBodies. From University of Freiburg,Collaborative Research Institute Intelligent Oncology,BrainLinks-BrainTools. Models Runnable Biology model Beyond Esm2 Graph Enhanced Protein Sequence Modeling With Efficient Protein/nucleotide language model: Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient. From Huazhong University of Science and Technology,Fudan University,Northwestern Polytechnical University. Models Runnable Biology model facebookresearch/esm | 4,140 stars Biggim Drugresponse Biggim Drugresponse renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Biogpt Biogpt renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Biokg Gnn Biokg Gnn renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Biomedclip Biomedclip renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Biomedica Biomedica renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Biomedparse Biomedparse renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model BioNeMo AlphaFold2 NIM BioNeMo AlphaFold2 NIM renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable protein or structure data google-deepmind/alphafold | 14,697 stars BioNeMo Proteinmpnn NIM BioNeMo Proteinmpnn NIM renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model NVIDIA-BioNeMo/bionemo-recipes | 806 stars BioNeMo Rfdiffusion NIM BioNeMo Rfdiffusion NIM renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model NVIDIA-BioNeMo/bionemo-recipes | 806 stars Biopathnet Biopathnet renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Bioreason Bioreason renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Biosimdock AI model: BiosimDock. From DeepOrigin. Domain: Medicine,Biology. Models Runnable Biology model Birna Bert Protein/nucleotide language model: BiRNA-BERT. From Bangladesh University of Engineering and Technology,University of California Riverside,Carnegie Mellon University (CMU). Models Runnable Biology model Bmfm DNA Bmfm DNA renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Bmfm RNA Bmfm RNA renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Boltz Boltz renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Boltz 1 Protein structure prediction model: Boltz-1. From Massachusetts Institute of Technology (MIT), Genesis Therapeutics. Models Runnable Biology model Boltz 2 AI model: Boltz-2. From Massachusetts Institute of Technology (MIT),Recursion Pharmaceuticals,ETH Zurich,Valence Labs. Models Runnable Biology model Boltz1 Boltz1 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Boltz2 Boltz2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Boltz2 NIM Boltz2 NIM applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data NVIDIA-BioNeMo/bionemo-recipes | 806 stars Boltzgen Boltzgen renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Borzoi Borzoi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Botanic0 Botanic0 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Bpnet Bpnet applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Bprna Align AI model: bpRNA-align. From Oregon State University. Models Runnable sequencing reads Brms Brms renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Btfbs AI model: BTFBS. From Nanjing Agricultural University. Models Runnable Biology model C2s Scale Protein/nucleotide language model: C2S-Scale. From Google Research,Yale University,Google DeepMind,Brown University,University of Southern California. Models Runnable Biology model Cadd Cadd renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Caduceus Caduceus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cancerfoundation Cancerfoundation renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cardioboost Local deterministic CardioBoost evidence feature embedding for cardiac variant/evidence records; no clinical diagnosis or risk prediction is emitted. Models Runnable Biology model Carp Protein/nucleotide language model: CARP. From Microsoft Research. Models Runnable Biology model Cas Offinder Cas Offinder renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cell O1 Cell O1 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cell2location Cell2location renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellama Cellama renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellbender Cellbender renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellchat Cellchat renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Celle 2 Image analysis model: CELLE-2. From Chan Zuckerberg Initiative,University of California San Francisco,University of California (UC) Berkeley. Models Runnable Biology model Cellfm Cellfm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellforge Cellforge renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellotype Cellotype processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Cellplm Cellplm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellpose Cellpose processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Cellpose Dino Cellpose Dino processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Cellpose SAM Cellpose SAM processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Cellrank Cellrank renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellsam Cellsam processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Celltypist Celltypist renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Teichlab/celltypist | 491 stars Celltypist Models Celltypist Models renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Teichlab/celltypist | 491 stars Cellvit Cellvit renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellwhisperer Cellwhisperer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cellxgene Census Cellxgene Census renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chai 1 Protein structure prediction model: CHAI-1. From Chai discovery. Models Runnable Biology model Chai1 Chai1 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chai2 Chai2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chatmol AI model: ChatMol. From Tsinghua University,PingAn Technology,Beijing University of Posts and Telecommunications. Models Runnable Biology model Checkm2 Checkm2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chemberta AI model: ChemBERTa. From University of Toronto,Reverie Labs,DeepChem. Models Runnable Biology model Chemberta2 Chemberta2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chemberta3 Chemberta3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chemistry42 AI model: Chemistry42. From Insilico Medicine AI. Models Runnable Biology model Chemnet Protein structure prediction model: ChemNet. From University of Washington. Models Runnable Biology model Chemprop Chemprop renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chief Image analysis model: CHIEF. From Harvard Medical School,Massachusetts Institute of Technology (MIT),Sichuan University,Sun Yat-sen University,Shenzhen Maternity & Child Healthcare Hospital,Chongqing University Cancer Hospital,Harvard... Models Runnable Biology model Chroma Chroma renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chromatin Llm Predicts chromatin accessibility from DNA sequence using a foundation model trained on ATAC-seq and DNase-seq data. Models Runnable Biology model Chrombpnet Chrombpnet applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Chromfound Chromfound renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Chromhmm Chromhmm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Clair3 Clair3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Clape Db AI model: CLAPE-DB. From Tsinghua University. Models Runnable Biology model Cleandna Cleandna renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable sequence data Clr Esp AI model: CLR_ESP. From Kansas State University. Models Runnable Biology model Codonmpnn AI model: CodonMPNN. From Harvard Medical School,Massachusetts Institute of Technology (MIT). Models Runnable Biology model Codontransformer AI model: CodonTransformer. From Vector Institute,University of Toronto,Université Paris Cité. Models Runnable Biology model Colabdesign Colabdesign renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Complexa Design Complexa Design applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable Biology model NVIDIA-BioNeMo/bionemo-recipes | 806 stars Conch Conch renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Confrank AI model: ConfRank. From University of Bonn,Institute for Numerical Simulation,Fraunhofer Institute for Algorithms and Scientific Computing. Models Runnable Biology model Connectome Workbench Connectome Workbench renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Conodl AI model: ConoDL. From Chongqing University,Ministry of Natural Resources (China). Models Runnable Biology model Copra AI model: CoPRA. From Tsinghua University,University College London (UCL),Monash University,Beijing University of Posts and Telecommunications. Models Runnable Biology model Cpac AI model: CPAC. From Texas A&M. Domain: Biology. Models Runnable Biology model Cpcprot Protein/nucleotide language model: CPCProt. From University of Toronto. Models Runnable Biology model Cpdiffusion AI model: CPDiffusion. From Shanghai Jiao Tong University,University of New South Wales,University of Cambridge,Shanghai AI Lab. Models Runnable Biology model Crispresso2 Crispresso2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Crisprscan Crisprscan renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Crisprware Crisprware renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Crl Protein structure prediction model: CRL. From Ulm University. Models Runnable Biology model Crossbind AI model: CrossBind. From Shanghai AI Lab,Fudan University,Loughborough University,Chinese University of Hong Kong (CUHK),Shanghai Jiao Tong University. Models Runnable Biology model Cryochains Image analysis model: CryoChains. From University of California Santa Barbara (UCSB),Stanford University. Models Runnable Biology model Cryodrgn Cryodrgn renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cutesv Cutesv renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Cyrius Cyrius renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model D3lm D3lm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Danq Danq applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Dark Protein/nucleotide language model: DARK. From University College London (UCL). Models Runnable Biology model Darwinomics Cgt Dose Exposure Response Model Builds dose, exposure, and response model summary rows from clinical endpoint evidence. Models Available Biology model Darwinomics Cgt Editing Offtarget Risk Score Summarizes predicted editing off-target risk evidence for guide candidates. Models Available Biology model Darwinomics Cgt Gene Edit Guide Design Score Scores guide design candidates against declared target sequences and model metadata. Models Available sequence data Darwinomics Cgt Immunophenotype State Call Calls cell product immunophenotype state from flow panel evidence and model metadata. Models Available Biology model Darwinomics Cgt Product Potency Model Computes product potency scores from declared potency assay evidence. Models Available Biology model Darwinomics Doc Layout Vlm Reader Darwinomics Doc Layout Vlm Reader applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable Biology model Darwinomics Proto Causal Model Evo1 Darwinomics Proto Causal Model Evo1 applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Causal Model Evo2 Darwinomics Proto Causal Model Evo2 applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Causal Model Progen2 Darwinomics Proto Causal Model Progen2 applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Causal Model Progen3 Darwinomics Proto Causal Model Progen3 applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Inverse Folding Esm If1 proto inverse folding esm if1 Models Runnable protein or structure data facebookresearch/esm | 4,140 stars Darwinomics Proto Inverse Folding Fampnn Darwinomics Proto Inverse Folding Fampnn applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data Darwinomics Proto Inverse Folding Ligandmpnn Darwinomics Proto Inverse Folding Ligandmpnn applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data Darwinomics Proto Inverse Folding Proteinmpnn Darwinomics Proto Inverse Folding Proteinmpnn applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data Darwinomics Proto Masked Model Ablang Darwinomics Proto Masked Model Ablang applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Masked Model Esm2 Darwinomics Proto Masked Model Esm2 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data facebookresearch/esm | 4,140 stars Darwinomics Proto Masked Model Esm3 Darwinomics Proto Masked Model Esm3 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data Darwinomics Proto Masked Model Esmc Darwinomics Proto Masked Model Esmc applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data Darwinomics Proto RNA Splicing Pangolin Darwinomics Proto RNA Splicing Pangolin applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto RNA Splicing Splice Transformer proto rna splicing splice transformer Models Runnable sequence data Darwinomics Proto RNA Splicing Spliceai Darwinomics Proto RNA Splicing Spliceai applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Sequence Scoring Alphagenome Darwinomics Proto Sequence Scoring Alphagenome applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Sequence Scoring Borzoi Darwinomics Proto Sequence Scoring Borzoi applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Sequence Scoring Deeppbs Specificity proto sequence scoring deeppbs specificity Models Runnable sequence data Darwinomics Proto Sequence Scoring Enformer Darwinomics Proto Sequence Scoring Enformer applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Sequence Scoring Malinois Darwinomics Proto Sequence Scoring Malinois applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Sequence Scoring Na Mpnn Specificity proto sequence scoring na mpnn specificity Models Runnable sequence data Darwinomics Proto Sequence Scoring Puffin Darwinomics Proto Sequence Scoring Puffin applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Darwinomics Proto Structure Design Rfdiffusion3 Darwinomics Proto Structure Design Rfdiffusion3 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data Darwinomics Proto Structure Dynamics Bioemu Darwinomics Proto Structure Dynamics Bioemu applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data Darwinomics Proto Structure Prediction AlphaFold2 Darwinomics Proto Structure Prediction AlphaFold2 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data google-deepmind/alphafold | 14,697 stars Darwinomics Proto Structure Prediction AlphaFold3 Darwinomics Proto Structure Prediction AlphaFold3 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data google-deepmind/alphafold3 | 8,276 stars Darwinomics Proto Structure Prediction Boltz2 Darwinomics Proto Structure Prediction Boltz2 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data Darwinomics Proto Structure Prediction Chai1 Darwinomics Proto Structure Prediction Chai1 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data Darwinomics Proto Structure Prediction Esmfold Darwinomics Proto Structure Prediction Esmfold applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data facebookresearch/esm | 4,140 stars Darwinomics Proto Structure Prediction Esmfold2 Darwinomics Proto Structure Prediction Esmfold2 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data facebookresearch/esm | 4,140 stars Darwinomics Proto Structure Prediction Protenix Darwinomics Proto Structure Prediction Protenix applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data Darwinomics Proto Structure Prediction Rf3 Darwinomics Proto Structure Prediction Rf3 applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data Ddgemb AI model: DDGemb. From University of Bologna. Models Runnable Biology model Ddim Protein/nucleotide language model: DDIM. From University Paris-Saclay,Radboud University Medical Center. Models Runnable Biology model Ddpm Protein/nucleotide language model: DDPM. From University Paris-Saclay,Radboud University Medical Center. Models Runnable Biology model Decompdiff AI model: DecompDiff. From University of Illinois Urbana-Champaign (UIUC),ByteDance,University of Chinese Academy of Sciences,Chinese Academy of Sciences,Tsinghua University. Models Runnable Biology model Deep Learning Enabled Discovery Of Kinase Drug Targets In Pharos AI model: Deep Learning Enabled Discovery of Kinase Drug Targets in Pharos. From West Virginia University,University of New Mexico. Models Runnable Biology model Deep Learning Linking Mechanistic Models To Single Cell Transcriptomics Data Reveals Transcriptional Bursting In Response To DNA Damage AI model: Deep learning linking mechanistic models to single-cell transcriptomics data reveals transcriptional bursting in response to DNA damage. Models Runnable Biology model Deepblink Deepblink processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Deepcell Mesmer Deepcell Mesmer applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable image or spatial data Deepchem Deepchem renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Deepconpred2 Protein structure prediction model: DeepConPred2. From Tsinghua University. Models Runnable Biology model Deepconsensus Deepconsensus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Deepcrispr Deepcrispr renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Deepfri AI model: DeepFRI. From Flatiron Institute,University of California San Diego,Jagiellonian University,New York University (NYU),Broad Institute,University of Auckland,Massachusettes General Hospital,Harvard Medical School,Massachusetts... Models Runnable Biology model Deeploc AI model: DeepLoc. From Technical University of Denmark,University of Copenhagen. Models Runnable Biology model Deepmicro Deepmicro renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Deepread Protein/nucleotide language model: DeepREAD. From Shape Therapeutics. Models Runnable Biology model Deeprelax Protein structure prediction model: DeepRelax. From National University of Singapore,Sun Yat-sen University,Peking University,China Medical University Hospital,Asia university,Guangdong L-Med Biotechnology Company. Models Runnable Biology model Deepsa AI model: DeepSA. From ShanghaiTech University. Models Runnable Biology model Deepurfold Protein structure prediction model: DeepUrfold. From University of Virginia. Models Runnable Biology model Deepvariant Deep learning-based variant caller that outperforms GATK HaplotypeCaller on most benchmarks. Requires GPU for practical runtimes. Models Runnable aligned sequencing reads google/deepvariant | 3,740 stars Dfmdock AI model: DFMDock. From Johns Hopkins University. Models Runnable Biology model Di Tasser Di Tasser renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Dia Bert Dia Bert renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Diann Diann renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Diffab Diffab renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Diffbind Diffbind renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Diffbindfr AI model: DiffBindFR. From Peking University,Tsinghua-Peiking Center for Life Sciences. Models Runnable Biology model Diffdock AI model: DiffDock. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model Diffdock NIM Diffdock NIM supports molecular design or docking analysis with structured inputs, scored outputs, and provenance for review. Models Runnable Biology model NVIDIA-BioNeMo/bionemo-recipes | 806 stars Diffdock Pp AI model: DiffDock-PP. From Technical University of Munich,Massachusetts Institute of Technology (MIT). Models Runnable Biology model Diffforce AI model: DiffForce. From University of Cambridge,Shanghai Jiao Tong University,University of New South Wales. Models Runnable Biology model Diffpepbuilder Protein/nucleotide language model: DiffPepBuilder. From Peking University. Models Runnable Biology model Diffsbdd Crossdocked AI model: DiffSBDD (CrossDocked). From Ecole Polytechnique F´ed´erale de Lausanne (EPFL),University of Cambridge,Cornell University,Chinese Academy of Mathematics and System Science,University of Rome,Microsoft Research,University of... Models Runnable Biology model Discdiff Protein/nucleotide language model: DiscDiff. From Imperial College London. Models Runnable Biology model Distilprotbert Protein structure prediction model: DistilProtBert. From Bar-Ilan University. Models Runnable Biology model Dmpfold Protein structure prediction model: DMPFold. From University College London (UCL). Models Runnable Biology model Dmpnn Dmpnn renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Dmrseq Dmrseq renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Dnabert Protein/nucleotide language model: DNABERT. From Northeastern University. Models Runnable Biology model jerryji1993/DNABERT | 761 stars Dnabert2 Dnabert2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model jerryji1993/DNABERT | 761 stars Dnagrinder Protein/nucleotide language model: dnaGrinder. From Hong Kong Polytechnic University. Models Runnable Biology model Dncon2 Protein structure prediction model: DNCON2. From University of Missouri. Models Runnable Biology model Dorado Dorado renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Dplm Dplm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Drgn AI Image analysis model: DRGN-AI. From Stanford University,SLAC National Laboratory,Princeton University,Columbia University. Models Runnable Biology model Drkg Drkg renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Drugclip AI model: DrugCLIP. From Tsinghua University,Tsinghua-Peiking Center for Life Sciences,Peking University,Beijing Academy of Artificial Intelligence / BAAI. Models Runnable Biology model Drugex Drugex renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Drugformer AI model: DrugFormer. From University of Florida,University of Texas Health Science Center,H. Lee Moffitt Cancer Center and Research Institute. Models Runnable Biology model Drugtar AI model: DrugTar. From Isfahan University of Technology. Models Runnable Biology model Dti Lm AI model: DTI-LM. From University of Central Florida. Models Runnable Biology model Dualnetgo AI model: DualNetGO. From Hong Kong University of Science and Technology (HKUST). Models Runnable Biology model Dynaab Dynaab renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Dynamicbind Dynamicbind renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Efold Protein/nucleotide language model: eFold. From Harvard Medical School,Stanford University,Columbia University,University of Strasbourg. Models Runnable Biology model Eggnog Mapper Eggnog Mapper renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Egnn AI model: EGNN. From InstaDeep. Domain: Biology. Models Runnable Biology model Eigenfold Protein structure prediction model: EigenFold. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model Eitlem Kinetics AI model: EITLEM-Kinetics. From Beijing University of Chemical Technology. Models Runnable Biology model Enformer Enformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Enopt AI model: EnOpt. From University of Pittsburgh. Models Runnable Biology model Enzymeflow AI model: EnzymeFlow. From McGill University,Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),Hong Kong University of Science and Technology (HKUST),University of Washington,Microsoft Research,DeepMind,Shanghai... Models Runnable Biology model Epinformer Protein/nucleotide language model: EPInformer. From The University of Hong Kong,Harvard Medical School. Models Runnable Biology model Episcan AI model: EpiScan. From Sun Yat-sen University,Guangzhou National Laboratory. Models Runnable Biology model Equidock AI model: EquiDock. From Massachusetts Institute of Technology (MIT),ETH Zurich,Tencent. Models Runnable Biology model Ernie RNA Protein/nucleotide language model: ERNIE-RNA. From Microsoft Research,Syngentech,Tsinghua University. Models Runnable Biology model Esm Aa Protein structure prediction model: ESM-AA. From Peking University,Nanjing University,Tsinghua University,PharMolix. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm Cambrian Esm Cambrian renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm Dbp Protein/nucleotide language model: ESM-DBP. From Hunan University. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm Gearnet AI model: ESM-GearNet. From Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal,IBM Research,HEC Montreal,CIFAR AI Research. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm Nbr AI model: ESM-NBR. From Hunan University. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm1 43m Protein/nucleotide language model: ESM1-43M. From Facebook AI Research,New York University (NYU). Models Runnable Biology model Esm1 670m Ur100 Protein/nucleotide language model: ESM1-670M (UR100). From Facebook AI Research,New York University (NYU). Models Runnable Biology model Esm1 670m Ur50 D Protein/nucleotide language model: ESM1-670M (UR50/D). From Facebook AI Research,New York University (NYU). Models Runnable Biology model Esm1 670m Ur50 S Protein/nucleotide language model: ESM1-670M (UR50/S). From Facebook AI Research,New York University (NYU). Models Runnable Biology model Esm1 85m Protein/nucleotide language model: ESM1-85M. From Facebook AI Research,New York University (NYU). Models Runnable Biology model Esm1b Protein/nucleotide language model: ESM1b. From Facebook AI Research,New York University (NYU). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm1v Protein/nucleotide language model: ESM1v. From Facebook AI Research,New York University (NYU),University of California (UC) Berkeley. Models Runnable Biology model Esm2 Esm2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 150m Protein structure prediction model: ESM2-150M. From Meta AI,New York University (NYU),Stanford University,Massachusetts Institute of Technology (MIT). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 15b Protein structure prediction model: ESM2-15B. From Meta AI,New York University (NYU),Stanford University,Massachusetts Institute of Technology (MIT). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 35m Protein structure prediction model: ESM2-35M. From Meta AI,New York University (NYU),Stanford University,Massachusetts Institute of Technology (MIT). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 3b Protein structure prediction model: ESM2-3B. From Meta AI,New York University (NYU),Stanford University,Massachusetts Institute of Technology (MIT). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 650m Protein structure prediction model: ESM2-650M. From Meta AI,New York University (NYU),Stanford University,Massachusetts Institute of Technology (MIT). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 8m Protein structure prediction model: ESM2-8M. From Meta AI,New York University (NYU),Stanford University,Massachusetts Institute of Technology (MIT). Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm2 Embeddings Esm2 Embeddings renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esm3 Esm3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Esm3 Open Small Protein/nucleotide language model: ESM3-open-small. From EvolutionaryScale,University of California (UC) Berkeley. Models Runnable Biology model Esmflow Protein structure prediction model: ESMFlow. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model Esmfold Predicts protein structures using a single-sequence language model (ESM-2) without requiring MSAs. 6x faster than AlphaFold2 but slightly less accurate. Use for rapid predictions. Models Runnable protein or structure data facebookresearch/esm | 4,140 stars Esmif Ddg AI model: ESMIF-DDG. From Peptone. Domain: Biology. Models Runnable Biology model facebookresearch/esm | 4,140 stars Esmif1 Esmif1 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model facebookresearch/esm | 4,140 stars Eternafold Eternafold renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Eva Immunology Eva Immunology renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Eve Eve renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Eve Model Eve Model renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Evo Protein/nucleotide language model: Evo. From Stanford University,University of California (UC) Berkeley,Together. Models Runnable Biology model Evo 2 40b Protein/nucleotide language model: Evo 2 40B. From Arc Institute,Stanford University,NVIDIA,Liquid,University of California (UC) Berkeley,Goodfire,Columbia University,University of California San Francisco. Models Runnable Biology model Evo 2 7b Protein/nucleotide language model: Evo 2 7B. From Arc Institute,Stanford University,NVIDIA,Liquid,University of California (UC) Berkeley,Goodfire,Columbia University,University of California San Francisco. Models Runnable Biology model Evo2 EVO2 is a foundation model for DNA sequences. Predicts variant effects, designs regulatory elements, and characterizes non-coding regions. Models Runnable Biology model Evo2 7b Evo2 7b renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Evo2 NIM Evo2 NIM applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data NVIDIA-BioNeMo/bionemo-recipes | 806 stars Evobind2 AI model: EvoBind2. From Stockholm University,Science for Life Laboratory. Models Runnable Biology model Evodiff Evodiff renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Evomil AI model: EvoMIL. From University of Glasgow,Cancer Research UK Beatson Institute. Models Runnable Biology model Exomiser Exomiser renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Exselfrl AI model: ExSelfRL. From Soochow University. Models Runnable Biology model Fabind AI model: FABind. From Renmin University of China,Huazhong University of Science and Technology,Microsoft Research AI for Science,University of Science and Technology of China (USTC). Models Runnable Biology model Finemap Finemap renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Flexsbdd AI model: FlexSBDD. From University of Science and Technology of China (USTC),State Key Laboratory of Cognitive Intelligence,Princeton University. Models Runnable Biology model Flexynesis Flexynesis renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Fmriprep Fmriprep renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Foldflow Protein/nucleotide language model: FoldFlow. From McGill University,Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),Dreamfold,University of Montreal / Université de Montréal,University of Oxford. Models Runnable Biology model Foldflow2 Protein/nucleotide language model: FoldFlow2. From Dreamfold,University of Montreal / Université de Montréal,McGill University,University of Oxford. Models Runnable Biology model Foldseek Foldseek renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Foldx Foldx renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Former AI model: µFormer. From Microsoft Research AI for Science. Models Runnable Biology model Fragllama AI model: FragLlama. From YDS Pharmatech. Models Runnable Biology model Fragpipe Fragpipe applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable Biology model Frameflow Frameflow renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Freesurfer Freesurfer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Fvfold Protein structure prediction model: FvFold. From Jeonbuk National University. Models Runnable Biology model Galactica Protein/nucleotide language model: Galactica. From Meta AI. Models Runnable Biology model Gatortron Gatortron renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Gearbind AI model: GearBind. From BioGeometry,Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal,Fudan University,HEC Montreal. Models Runnable Biology model Gearnet AI model: GearNet. From Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal,University of Cambridge,IBM Research,HEC Montreal,CIFAR AI Research. Models Runnable Biology model Gears Gears supports single-cell analysis, annotation, or embedding workflows with reproducible matrix and metadata handling. Models Runnable Biology model Genecompass Genecompass renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Geneformer Geneformer analyzes cell states using a transformer model trained on 30M cells. Predicts perturbation effects and identifies gene regulatory networks. Models Runnable Biology model Geneformer V2 Geneformer V2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Genejepa Genejepa renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Genept Genept renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Generator Genomic Generator Genomic renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Generator Genomic V2 Generator Genomic V2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Genesis AI model: Genesis. From Ecole Polytechnique F´ed´erale de Lausanne (EPFL),Swiss Institute of Bioinformatics,Imperial College London,University of Oxford,Prescient Design. Models Runnable Biology model Genetic Algorithm AI model: Genetic algorithm. From Institute for Advanced Study. Models Runnable Biology model Genie 2 Bio Protein/nucleotide language model: Genie 2 (bio). From Columbia University,Rutgers University. Models Runnable Biology model Genie Scope Bio AI model: Genie-SCOPe (bio). From Columbia University. Models Runnable Biology model Genie2 Genie2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Genmol Genmol renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Genmol NIM Genmol NIM supports molecular design or docking analysis with structured inputs, scored outputs, and provenance for review. Models Runnable Biology model NVIDIA-BioNeMo/bionemo-recipes | 806 stars Genslm Protein/nucleotide language model: GenSLM. From University of Chicago,NVIDIA,Harvard University,Cerebras Systems,Technical University of Munich,California Institute of Technology. Models Runnable Biology model Geoab AI model: GeoAB. From Zhejiang University (ZJU),Westlake University. Models Runnable Biology model Geoseqbuilder Protein/nucleotide language model: GeoSeqBuilder. From Peking University. Models Runnable Biology model Gitiii Single-cell analysis model: GITIII. From Yale School of Public Health. Models Runnable Biology model Glm Protein/nucleotide language model: gLM. From Harvard University. Models Runnable Biology model Gnina Gnina renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Golem Protein structure prediction model: Golem. From Alan Turing Institute. Models Runnable Biology model Gpn Brassicales Gpn Brassicales renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Gpt Molberta AI model: GPT-MolBERTa. From Carnegie Mellon University (CMU). Models Runnable Biology model Graphbp AI model: GraphBP. From Texas A&M,Fujitsu. Models Runnable Biology model Graphec AI model: GraphEC. From Sun Yat-sen University,National Supercomputing Center in Shenzhen,Chongqing University,Key Laboratory of Machine Intelligence and Advanced Computing. Models Runnable Biology model Grasr Protein structure prediction model: GraSR. From Shanghai Jiao Tong University,Ministry of Education of China. Models Runnable Biology model Grnformer Grnformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Grover Grover renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Gtdbtk Gtdbtk renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model H Optimus 0 AI model: H-optimus-0. From. Domain: Vision,Biology,Medicine. Models Runnable Biology model Haloclass AI model: HaloClass. From University of California Davis,Pt. Jawahar Lal Nehru Memorial Medical College,Purdue University. Models Runnable Biology model Heist Heist processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Helixfold3 Protein structure prediction model: HelixFold3. From Tecorigin LTD,Tsinghua University,Baidu. Models Runnable Biology model Hetddi Hetddi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Hibou Hibou renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Hicegnn Protein structure prediction model: HiCEGNN. From University of Missouri. Models Runnable Biology model Hifi Nn AI model: HiFi - NN. From Basecamp Research,Technical University of Munich,Molecular Institute of Biology,Microsoft Research. Models Runnable Biology model Hjrss AI model: HJRSS. From University of Washington,Microsoft. Models Runnable Biology model Hopfield Networks 2020 Protein/nucleotide language model: Hopfield Networks (2020). From Johannes Kepler University Linz,Institute of Advanced Research in Artificial Intelligence,University of Oslo. Models Runnable Biology model Hovernet Hovernet renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Humann3 Humann3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Hyenadna Protein/nucleotide language model: HyenaDNA. From Stanford University,Harvard University,Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal. Models Runnable Biology model Idpfold Protein structure prediction model: IDPFold. From Shandong University,BioMap Research,Fuzhou University,Shanghai Jiao Tong University. Models Runnable Biology model Iev2mol AI model: IEV2MOL. From Tokyo Institute of Technology. Models Runnable Biology model Igfold Igfold renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Iggm AI model: IgGM. From Chinese Academy of Sciences,University of Chinese Academy of Sciences,Tencent. Models Runnable Biology model Ilastik Ilastik renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Immunebuilder Immunebuilder renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Importance Of Higher Order Epistasis In Large Protein Sequence Function Relationships AI model: Importance of higher-order epistasis in large protein sequence-function relationships. From University of Florida. Models Runnable Biology model Improved Motif Scaffolding With Se 3 Flow Matching AI model: Improved motif-scaffolding with SE(3) flow matching. From University of Oxford,Massachusetts Institute of Technology (MIT),Microsoft Research AI for Science. Models Runnable Biology model Innovative Drug Like Molecule Generation From AI model: Innovative Drug-like Molecule Generation from. From University of Pittsburgh,Carnegie Mellon University (CMU). Models Runnable Biology model Instanseg Instanseg processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Instructcell Instructcell renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Instructplm Protein structure prediction model: InstructPLM. From Zhejiang Lab,Zhejiang University (ZJU),Nanjing University,Tsinghua University,Alibaba,Chinese University of Hong Kong (CUHK). Models Runnable Biology model Integrating Deep Learning And Synthetic Biology A Co Design Approach For Enhancing Gene Expression Via N Terminal Coding Sequences AI model: Integrating Deep Learning and Synthetic Biology: A Co-Design Approach for Enhancing Gene Expression via N-Terminal Coding Sequences. From National University of Singapore,Jiangnan University. Models Runnable aligned sequencing reads Interactiomics Interactiomics renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Iqtree Build phylogenetic trees using IQ-TREE. Models Runnable Biology model Iqtree2 Iqtree2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Jaeger AI model: Jaeger. From University Medicine Greifswald,Utrecht University,Friedrich Schiller University Jena. Models Runnable Biology model Jura Bio Model Protein/nucleotide language model: JURA Bio Model. From JURA Bio,New York University (NYU),Harvard Medical School,Columbia University. Models Runnable Biology model Keap Embedding model: KeAP. From The University of Hong Kong,ByteDance,JancsiTech,OPPO HealthLab. Models Runnable Biology model Kgdrp Kgdrp renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Knomol AI model: KnoMol. From Zhejiang University (ZJU),Jiangsu University of Technology,Zhejiang University School of Medicine. Models Runnable Biology model Kronos Kronos renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Langcell Langcell renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Lbster Protein/nucleotide language model: LBSTER. From Prescient Design,Genentech. Models Runnable Biology model Libinvent Libinvent renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ligandmpnn Ligandmpnn renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Lightweight Fine Tuning A Pretrained Protein Language Model For Protein Secondary Protein structure prediction model: Lightweight Fine-tuning a Pretrained Protein Language Model for Protein Secondary. From Henan University. Models Runnable Biology model Lingshu Cell Lingshu Cell renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Lipidblast Lipidblast renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Lirical Lirical renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Llama 7b Protein Oriented Instruction Tuned Protein structure prediction model: LLaMA-7B (protein-oriented instruction-tuned). From Zhejiang University (ZJU). Models Runnable Biology model Llps Protein/nucleotide language model: LLPS. From InstaDeep. Models Runnable Biology model Lm Gvp AI model: LM-GVP. From Amazon Machine Learning Solutions Lab,Johnson & Johnson. Models Runnable Biology model Longphase Longphase renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Loop Diffusion AI model: Loop-Diffusion. From University of Washington. Models Runnable Biology model Lucaone Lucaone renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Lukepi Lukepi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model M6anet M6anet renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Machine Learning A Model For RNA Structure Prediction Protein structure prediction model: Machine learning a model for RNA structure prediction. From International School for Advanced Studies,Institute of Structural Biology,Technical University of Munich. Models Runnable Biology model Mahlool AI model: MahLool. From University of Rochester. Models Runnable Biology model Mammal Mammal renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Masif Masif renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Massa Embedding model: MASSA. From Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems,Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences. Models Runnable Biology model Massivefold Protein structure prediction model: MassiveFold. From Université de Lille,Linköping University,Universite de Technologie de Compiègne – CNRS. Models Runnable Biology model Maxquant Quantify proteomics data using MaxQuant. Models Runnable aligned sequencing reads Mbp AI model: MBP. From University of Science and Technology of China (USTC),Tencent,Zhejiang University (ZJU). Models Runnable Biology model Mdgen AI model: Mdgen. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model Medaka Medaka renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Meditron Meditron renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Megamolbart AI model: MegaMolBART. From NVIDIA. Domain: Biology. Models Runnable Biology model Metaboanalyst Metaboanalyst renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Metaphlan4 Metaphlan4 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Metgem Metgem renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Metl Global Protein/nucleotide language model: METL-Global. From University of Wisconsin Madison,Morgridge Institute for Research. Models Runnable Biology model Mhcflurry Mhcflurry renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mhnfs Mhnfs renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Micro SAM Micro SAM processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Midas2 Midas2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mif St Protein/nucleotide language model: MIF-ST. From Microsoft Research,OpenBioML,University of Chicago. Models Runnable Biology model Minigraph Cactus Minigraph Cactus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mixomics Mixomics renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mldd3utrmrrnas Protein/nucleotide language model: MLDD3UTRmRRNAS. From Ginkgo Bioworks. Models Runnable Biology model Mmaple AI model: MMAPLE. From City University of New York,Cornell University. Models Runnable Biology model Moderngena Moderngena renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable sequence data Moefold2d Protein structure prediction model: MoEFold2D. From George Washington University. Models Runnable Biology model Mofa2 Mofa2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Molecular Diffusion Models With Virtual Receptors AI model: Molecular Diffusion Models with Virtual Receptors. From Verily Research. Models Runnable Biology model Moler AI model: MoLeR. From Microsoft Research,Novartis. Models Runnable Biology model Molfeat Molfeat renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Molformer Molformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Molformer Xl Protein structure prediction model: MoLFormer-XL. From IBM. Models Runnable Biology model Molhit Molhit renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Molmim Molmim renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Molmim NIM Molmim NIM supports molecular design or docking analysis with structured inputs, scored outputs, and provenance for review. Models Runnable Biology model NVIDIA-BioNeMo/bionemo-recipes | 806 stars Molmvc Embedding model: MolMVC. From Central South University,Singapore Agency for Science. Models Runnable Biology model Molpath AI model: MolPath. From Southwest Petroleum University,East China Normal University. Models Runnable Biology model Molphenix Single-cell analysis model: MolPhenix. From Valence Labs,University of British Columbia (UBC),Vector Institute,University of Toronto,University of Montreal / Université de Montréal,Mila - Quebec AI (originally Montreal Institute for... Models Runnable Biology model Molsnapper AI model: MolSnapper. From University of Oxford. Models Runnable Biology model Monocle3 Trajectory and pseudotime analysis using Monocle3. Models Runnable Biology model Mothra AI model: Mothra. From Tokyo Institute of Technology. Models Runnable Biology model Mpnnsol Protein/nucleotide language model: MPNNsol. From Ecole Polytechnique F´ed´erale de Lausanne (EPFL),University at Buffalo,University of Washington,Massachusetts Institute of Technology (MIT). Models Runnable Biology model Mrnabert Mrnabert renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mrnet Mrnet renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Msa Transformer Protein structure prediction model: MSA Transformer. From Facebook AI Research,University of California (UC) Berkeley,New York University (NYU). Models Runnable Biology model Msfragger Msfragger renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mspbrsp AI model: MsPBRsP. From Zhengzhou University. Models Runnable Biology model Mulan Protein/nucleotide language model: MULAN. From AIRI Artificial Intelligence Research Institute,Skolkovo Institute of Science and Technology,Belozersky Institute of Physio-Chemical Biology,Ligand Pro. Models Runnable Biology model Multi Evolve Multi Evolve renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Multiverseg Image analysis model: MultiverSeg. From Massachusetts Institute of Technology (MIT),Databricks. Models Runnable Biology model Multivi Multivi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mupipr AI model: MuPIPR. From University of California Los Angeles (UCLA),University of Pennsylvania. Models Runnable Biology model Musk Pathology Musk Pathology renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Mxfold2 Mxfold2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Mzmine3 Mzmine3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Naepro AI model: NAEPro. From University of California Santa Barbara (UCSB),Massachusetts Institute of Technology (MIT),Carnegie Mellon University (CMU). Models Runnable Biology model Naturelm Naturelm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Neoapred AI model: NeoaPred. From South China University of Technology,Jinan University. Models Runnable Biology model Netsurfp 2 0 Protein structure prediction model: NetSurfP-2.0. From Technical University of Denmark,University of Copenhagen,Universidad Nacional de San Martín,AIMST University. Models Runnable Biology model Nextclade Nextclade renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Nextmol Nextmol renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Nicheformer Nicheformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Novae AI model: Novae. From CentraleSupelec,Gustave Roussy,Université Paris Cité. Models Runnable Biology model Nt V3 Nt V3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ntv3 Ntv3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Nucleotide Transformer Protein/nucleotide language model: Nucleotide Transformer. From NVIDIA,Technical University of Munich,InstaDeep. Models Runnable Biology model Nucleotide Transformer V2 Nucleotide Transformer V2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Nvidia Parabricks Parabricks performs GPU-accelerated alignment and variant calling. Produces results equivalent to BWA-MEM + GATK but 30-50x faster on GPU. Models Runnable Biology model Nvmolkit Nvmolkit renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model O1 Preview Protein/nucleotide language model: o1-preview. From OpenAI. Models Runnable Biology model Omegafold Omegafold renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Omiclip Omiclip renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Omni DNA Omni DNA renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Omnicell Omnicell renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Omnigenome Protein/nucleotide language model: OmniGenome. From University of Exeter. Models Runnable Biology model Omnina Protein/nucleotide language model: OmniNA. From Tianjin Medical University. Models Runnable Biology model Omnipose Omnipose processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Ontoprotein Protein/nucleotide language model: OntoProtein. From Zhejiang University (ZJU). Models Runnable Biology model Openfe Openfe renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Openfold Openfold renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model aqlaboratory/openfold | 3,391 stars Openfold2 NIM Openfold2 NIM applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data aqlaboratory/openfold | 3,391 stars Openfold3 NIM Openfold3 NIM applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable sequence data aqlaboratory/openfold | 3,391 stars Openmm Openmm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Openphenom S 16 Embedding model: OpenPhenom-S/16. From Recursion Pharmaceuticals. Models Runnable Biology model P Gemma Protein/nucleotide language model: P-gemma. From University of Siena. Models Runnable Biology model P Llama2 Protein/nucleotide language model: P-Llama2. From University of Siena. Models Runnable Biology model P Llama3 Protein/nucleotide language model: P-LLama3. From University of Siena. Models Runnable Biology model P Mistral Protein/nucleotide language model: P-Mistral. From University of Siena. Models Runnable Biology model P2rank P2rank renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pangolin Pangolin renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Paretodrug AI model: ParetoDrug. From Chinese University of Hong Kong (CUHK),Zhejiang Lab,Zhejiang University (ZJU),Huawei Noah's Ark Lab. Models Runnable Biology model Parm Protein/nucleotide language model: PARM. From Oncode Institute,UMC Utrecht,Netherlands Cancer Institute,University of Groningen,Radboud University Medical Center. Models Runnable Biology model Pathchat Pathchat applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable Biology model Pdfii AI model: PDFII. From Sichuan University. Models Runnable Biology model Pepglad AI model: PepGLAD. From Tsinghua University,Renmin University of China. Models Runnable Biology model Pepinvent Protein/nucleotide language model: PepINVENT. From AstraZeneca,Chalmers University of Technology. Models Runnable Biology model Pepmlm Protein/nucleotide language model: PepMLM. From Duke University,Cornell University,McMaster University. Models Runnable Biology model Pepnet Protein/nucleotide language model: PepNet. From Shandong University. Models Runnable Biology model Pepper Deepvariant Pepper Deepvariant renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable aligned sequencing reads google/deepvariant | 3,740 stars Pepprclip AI model: PepPrCLIP. From Duke University,Cornell University,Sanford Burnham Prebys Institute. Models Runnable Biology model Peptidebert AI model: PeptideBERT. From Carnegie Mellon University (CMU). Models Runnable Biology model Percolator Percolator renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pertpy Pertpy renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Petribert Protein/nucleotide language model: PeTriBERT. From University of Montpellier,BionomeeX. Models Runnable Biology model Pggb Pggb renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pharmcat Pharmcat renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Phenogenius Phenogenius renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Phikon Phikon renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Picrust2 Picrust2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Piscis Piscis processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Pkalm AI model: pKALM. From Hokkaido University. Models Runnable Biology model Pkasolver Pkasolver renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plant Caduceus Plant Caduceus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plant Dnabert Local deterministic Plant DNABERT-style k-mer feature embedding for Arabidopsis/plant DNA sequence inputs. Models Runnable Biology model jerryji1993/DNABERT | 761 stars Plant Dnagpt Plant Dnagpt renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plant Dnamamba Plant Dnamamba renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plantbimoe Plantbimoe renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plantcaduceus Plantcaduceus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plantrna Fm Plantrna Fm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Plapt AI model: PLAPT. From Wolfram Research,ASC27,Newport High School,Sanskriti School. Models Runnable Biology model Plasmidgpt AI model: PlasmidGPT. From Harvard University. Models Runnable Biology model Plink2 Plink2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pllama Protein/nucleotide language model: PLLaMa. From University of California Santa Barbara (UCSB),University of Lincoln,Chinese Academy of Agricultural Sciences,Swedish University of Agricultural Sciences. Models Runnable Biology model Pltnum AI model: PLTNUM. From Kyoto University,National Institute of Biomedical Innovation,RIKEN. Models Runnable Biology model Plus Rnn Protein/nucleotide language model: PLUS-RNN. From Seoul National University,LG AI Research,NAVER,Kangwon National University. Models Runnable Biology model Pmlm Large Protein/nucleotide language model: PMLM-large. From Microsoft Research Asia,Nanyang Technological University,Xi’an Jiaotong University,Sun Yat-sen University. Models Runnable Biology model Pocketflow AI model: PocketFlow. From University of Science and Technology of China (USTC),State Key Laboratory of Cognitive Intelligence,Harvard University. Models Runnable Biology model Pocketgen AI model: PocketGen. From University of Science and Technology of China (USTC),Hefei Comprehensive National Science Center,Harvard University,Broad Institute,Harvard Data Science Initiative. Models Runnable Biology model Poet Protein/nucleotide language model: PoET. From OpenProtein.ai. Models Runnable Biology model Popv Popv supports single-cell analysis, annotation, or embedding workflows with reproducible matrix and metadata handling. Models Runnable Biology model Ppflow AI model: PPFlow. From Zhejiang University (ZJU),Westlake University. Models Runnable Biology model Prealgpro AI model: PreAlgPro. From Shanghai Ocean University. Models Runnable Biology model Precious3gpt AI model: Precious3GPT. From Insilico Medicine AI,Harvard Medical School. Models Runnable Biology model Prepr Ct AI model: PrePR-CT. From King Abdullah University of Science and Technology (KAUST),Karolinska Institute. Models Runnable Biology model Primateai3d Primateai3d renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Prism Pathology Prism Pathology renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Pro Prime AI model: Pro-PRIME. From Shanghai Jiao Tong University,Shanghai AI Lab,East China University of Science and Technology,Shanghai Tech University,Guangzhou Inernational Bio Island,Chinese Academy of Sciences,Shanghai Academy of... Models Runnable Biology model Proberta Embedding model: ProBERTa. From University of Illinois Urbana-Champaign (UIUC),Reed College. Models Runnable Biology model Procalm Uniref9b Protein/nucleotide language model: ProCALM (Uniref9B). From Profluent Bio,California Institute of Technology. Models Runnable Biology model Procapnet Procapnet applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Profam1 Profam1 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Profile Prediction Protein/nucleotide language model: Profile Prediction. From University of Washington,Salesforce Research. Models Runnable Biology model Progen Protein/nucleotide language model: ProGen. From Salesforce Research,Stanford University. Models Runnable Biology model Progen2 Progen2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Progen2 Base Protein/nucleotide language model: ProGen2-base. From Salesforce Research,Columbia University,Johns Hopkins University. Models Runnable Biology model Progen2 Xlarge Protein/nucleotide language model: ProGen2-xlarge. From Salesforce Research,Columbia University,Johns Hopkins University. Models Runnable Biology model Prollama AI model: ProLLaMA. From Peking University,Peng Cheng Laboratory. Models Runnable Biology model Propermab AI model: PROPERMAB. From Regeneron. Domain: Biology. Models Runnable Biology model Prorna3d Single Protein structure prediction model: ProRNA3D-Single. From Virginia Tech (Virginia Polytechnic Institute and State University). Models Runnable Biology model Prosst Protein/nucleotide language model: ProSST. From Shanghai Jiao Tong University,Shanghai AI Lab,East China University of Science and Technology. Models Runnable Biology model Prostt5 Protein/nucleotide language model: ProstT5. From Technical University of Munich,Seoul National University,Institute for Advanced Study,TUM School of Life Sciences Weihenstephan. Models Runnable Biology model Prot T5 Xl Prot T5 Xl renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Prot2token Protein/nucleotide language model: Prot2Token. From University of Missouri,Politecnico di Milano. Models Runnable Biology model Protbert Bfd Protein/nucleotide language model: ProtBERT-BFD. From Technical University of Munich,NVIDIA,Seoul National University,Google,Oak Ridge National Laboratory,Med AI Technology. Models Runnable Biology model Protbert Uniref Protein/nucleotide language model: ProtBERT-UniRef. From Technical University of Munich,NVIDIA,Seoul National University,Google,Oak Ridge National Laboratory,Med AI Technology. Models Runnable Biology model Protbfn Protein/nucleotide language model: ProtBFN. From InstaDeep. Models Runnable Biology model Protein Mamba Protein/nucleotide language model: Protein-Mamba. From Rensselaer Polytechnic Institute,Stanford University,University of Minnesota,Korea Advanced Institute of Science and Technology (KAIST),University of Illinois Urbana-Champaign (UIUC). Models Runnable Biology model Proteinbert Protein/nucleotide language model: ProteinBERT. From Hebrew University of Jerusalem,Ben-Gurion University of the Negev,Deep Trading. Models Runnable Biology model Proteinchat AI model: ProteinChat. From University of California San Diego,BioMap Research,The Scripps Research Institute,Mohamed bin Zayed University of Artificial Intelligence (MBZUAI). Models Runnable Biology model Proteindt Protein/nucleotide language model: ProteinDT. From University of California (UC) Berkeley,California Institute of Technology,University of Toronto,University of Wisconsin Madison,Texas A&M,NVIDIA,Mila - Quebec AI (originally Montreal... Models Runnable Biology model Proteingan Protein/nucleotide language model: ProteinGAN. From Vilnius University,Chalmers University of Technology. Models Runnable Biology model Proteingenerator Protein/nucleotide language model: ProteinGenerator. From University of Washington,Institute for Protein Design,Georgia Institute of Technology,Microsoft,Heidelberg University. Models Runnable Biology model Proteinglm 1b Proteinglm 1b renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Proteininr Embedding model: ProteinINR. From Kakao. Models Runnable Biology model Proteinlm Protein/nucleotide language model: ProteinLM. From Tsinghua University,Beijing Academy of Artificial Intelligence / BAAI,Tencent. Models Runnable Biology model Proteinmpnn Ddg AI model: ProteinMPNN-DDG. From Peptone. Models Runnable Biology model Proteinmpnn NIM Proteinmpnn NIM applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data NVIDIA-BioNeMo/bionemo-recipes | 806 stars Proteinrediff AI model: ProteinReDiff. From FPT Software AI Center,University of Chicago,Indiana State University. Models Runnable Biology model Proteinsettransformer Protein/nucleotide language model: ProteinSetTransformer. From University of Wisconsin Madison. Models Runnable Biology model Proteinsgm AI model: ProteinSGM. From University of Toronto. Models Runnable Biology model Proteinstructuretransformer Protein/nucleotide language model: ProteinStructureTransformer. From Max Planck Institute of Biochemistry. Models Runnable Biology model Protem AI model: ProTeM. From Zhejiang Lab,Zhejiang University (ZJU),Huazhong University of Science and Technology,Mohamed bin Zayed University of Artificial Intelligence (MBZUAI). Models Runnable Biology model Protenix Protenix renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Protenix Mini Protenix Mini renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Protenix V2 Protenix V2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Protgpt2 Protein/nucleotide language model: ProtGPT2. From University of Bayreuth. Models Runnable Biology model Prothyena Protein/nucleotide language model: Prothyena. From Tokyo Institute of Technology. Models Runnable Biology model Protrek Protein/nucleotide language model: ProTrek. From Westlake University. Models Runnable Biology model Protrna Protein structure prediction model: ProtRNA. From Fudan University,Shanghai AI Lab. Models Runnable Biology model Protssn AI model: ProtSSN. From Shanghai Jiao Tong University,East China University of Science and Technology,Shanghai AI Lab. Models Runnable Biology model Protst Protein/nucleotide language model: Protst. From Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal,Intel Labs,HEC Montreal,CIFAR AI Research. Models Runnable Biology model Prott3 AI model: ProtT3. From National University of Singapore,University of Science and Technology of China (USTC),Hokkaido University. Models Runnable Biology model Prott5 Xl U50 Protein/nucleotide language model: ProtT5-XL-U50. From Technical University of Munich,Med AI Technology,NVIDIA,Oak Ridge National Laboratory,Google,Seoul National University. Models Runnable Biology model Prott5 Xxl Protein/nucleotide language model: ProtT5-XXL. From Technical University of Munich,Med AI Technology,NVIDIA,Oak Ridge National Laboratory,Google,Seoul National University. Models Runnable Biology model Prott5 Xxl Bfd Protein/nucleotide language model: ProtT5-XXL-BFD. From Technical University of Munich,Med AI Technology,NVIDIA,Oak Ridge National Laboratory,Google,Seoul National University. Models Runnable Biology model Prottrans Embeddings Prottrans Embeddings renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Prov Gigapath Prov Gigapath renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Prscs Prscs renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ptm Mamba Protein/nucleotide language model: PTM-Mamba. From Duke University. Models Runnable Biology model Pubmedbert Pubmedbert renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pvactools Pvactools renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pxdesign Pxdesign renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pyclone Vi Pyclone Vi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pypgx Pypgx renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Pyprophet Pyprophet renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rabona Rabona renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Raxml Build maximum likelihood trees using RAxML. Models Runnable Biology model Re Dock AI model: Re-Dock. From Zhejiang University (ZJU),Westlake University,University of Washington. Models Runnable Biology model Reasyn Reasyn renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Regenie Regenie renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Regformer Regformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Reinvent 4 AI model: Reinvent 4. From AstraZeneca. Domain: Biology. Models Runnable Biology model Reinvent4 Reinvent4 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Relate Relate renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rennaissance Single-cell analysis model: RENNAISSANCE. From Ecole Polytechnique F´ed´erale de Lausanne (EPFL),University of Cambridge,Harvard Medical School. Models Runnable Biology model Resp AI AI model: RESP AI. From University of California San Diego. Models Runnable Biology model Rethinking Molecular Design Integrating Latent Variable And Auto Regressive Models For Goal Directed Generation AI model: Rethinking Molecular Design: Integrating Latent Variable and Auto-Regressive Models for Goal Directed Generation. From ETH Zurich,University of Zurich,ETH AI Center. Models Runnable Biology model Revel Revel renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rfdiffusion NIM Rfdiffusion NIM applies protein, sequence, or structure modeling as a traceable analysis step with captured inputs and generated outputs. Models Runnable protein or structure data NVIDIA-BioNeMo/bionemo-recipes | 806 stars Rfdiffusion2 Rfdiffusion2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rfdiffusion3 Rfdiffusion3 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rfmix Rfmix renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rgi Rgi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rhofold Rhofold renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ribocode AI model: RiboCode. From Sun Yat-sen University,Rhegen Biotechnology,Chinese Academy of Sciences. Models Runnable Biology model Ribodiffusion AI model: RiboDiffusion. From Beihang University,Nanjing University,Chinese University of Hong Kong (CUHK). Models Runnable Biology model Rinalmo Protein structure prediction model: RiNALMo. From University of Zagreb,Genome Institute of Singapore,Bioinformatics Institute. Models Runnable Biology model Rita Xlarge Protein/nucleotide language model: Rita-XLarge. From LightOn,Harvard University,University of Oxford. Models Runnable Biology model RNA Fm Protein structure prediction model: RNA-FM. From Chinese University of Hong Kong (CUHK),Fudan University,Shanghai AI Lab,Harbin Institute of Technology,University of Electronic Science and Technology of China,Massachusetts Institute of... Models Runnable Biology model RNA Frameflow AI model: RNA-FrameFlow. From National University of Singapore,Prescient Design,University of Missouri,University of Cambridge. Models Runnable Biology model RNA Language Models Predict Mutations That Improve RNA Function AI model: RNA language models predict mutations that improve RNA function. From NERSC, Lawrence Berkeley National Laboratory,University of California San Francisco,University of California (UC) Berkeley. Models Runnable Biology model RNA Msm Protein/nucleotide language model: RNA-MSM. From Peking University,Shanghai AI Lab,Griffith University,Peng Cheng Laboratory,Shenzhen Bay Laboratory. Models Runnable Biology model Rnacg Protein/nucleotide language model: RNACG. From Tsinghua University. Models Runnable Biology model Rnadifffold Protein structure prediction model: RNADiffFold. From Hangzhou Institute of Medicine,Zhejiang University (ZJU),University of Chinese Academy of Sciences. Models Runnable Biology model Rnadiffusion Protein/nucleotide language model: RNAdiffusion. From Princeton University,Tsinghua University,Stanford University. Models Runnable Biology model Rnaernie Rnaernie renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rnafm Rnafm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rnaformer Protein structure prediction model: RNAformer. From University of Freiburg. Models Runnable Biology model Rnapro Rnapro renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Roberta Pfam Protein/nucleotide language model: RoBERTa (PFAM). From IBM Research,ETH Zurich. Models Runnable Biology model Rosettafold 3-track network protein structure prediction Models Runnable Biology model Rosettafold Aa Rosettafold Aa renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rosettafold All Atom Rfaa Protein structure prediction model: RoseTTAFold All-Atom (RFAA). From University of Washington,Seoul National University,University of Sheffield. Models Runnable Biology model Rosettafold Allatom Rosettafold Allatom renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rosettafold2 Rosettafold2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Rosettafold2 Lite AI model: RoseTTAFold2-Lite. From University of Washington,University of Texas Southwest Medical Center,Seoul National University,Massachusettes General Hospital,Harvard Medical School,Broad Institute. Models Runnable Biology model Rosettafold2na Rosettafold2na renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Saambe Mem AI model: SAAMBE-MEM. From Clemson University,Central China Normal University. Models Runnable Biology model Sachs AI model: SACHS. From Massachusetts Institute of Technology (MIT),Stanford University. Models Runnable Biology model Safe Mol Safe Mol renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Saige Saige renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Saluki Saluki applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Saprot Protein/nucleotide language model: SaProt. From Zhejiang University (ZJU),Westlake University. Models Runnable Biology model Scarches Scarches renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scbert Scbert renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Sccipher Sccipher supports single-cell analysis, annotation, or embedding workflows with reproducible matrix and metadata handling. Models Runnable Biology model Scenic Plus Scenic Plus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scformer Embedding model: scFormer. From University of Toronto,Vector Institute,University Health Network,Microsoft Research. Models Runnable Biology model Scfoundation Scfoundation renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model scGPT scGPT is a foundation model for single-cell genomics. Performs cell type annotation, gene network inference, and multi-omic integration. Trained on 33M cells. Models Runnable Biology model bowang-lab/scGPT | 1,589 stars Schyena Protein/nucleotide language model: scHyena. From Korea Advanced Institute of Science and Technology (KAIST). Models Runnable Biology model Scispacy Scispacy renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Sckgbert Sckgbert renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Sclong Sclong renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scmae Scmae renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scmamba Scmamba renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scmoformer Scmoformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scmulan Scmulan renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scprint2 Scprint2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scribbleprompt SAM Image analysis model: ScribblePrompt-SAM. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model Sctab Sctab renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Scuba D AI model: SCUBA-D. From University of Science and Technology of China (USTC),Oristruct Biotech Company,iFLYTEK Research. Models Runnable Biology model Scvelo Estimate RNA velocity using scVelo. Models Runnable Biology model Scvi Scvi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model scverse/scvi-tools | 1,650 stars Scvi Tools scVI performs dimensionality reduction, batch correction, and differential expression for single-cell data using a variational autoencoder. Smaller and faster than scGPT. Models Runnable Biology model scverse/scvi-tools | 1,650 stars Seal Spatial Seal Spatial renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Seamoon Protein structure prediction model: SeaMoon. From Sorbonne University,Université Grenoble Alpes,Institut Universitaire de France (IUF). Models Runnable Biology model Seedfold Local deterministic SeedFold feature embedding. Summarizes seed/plant structure inputs into finite local feature coordinates rather than neural structure predictions. Models Runnable Biology model Sei Model Sei Model renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Seqvec AI model: SeqVec. From Technical University of Munich. Models Runnable Biology model Severus Severus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Sgrnagen AI model: sgRNAGen. From Beijing Institute of Technology. Models Runnable Biology model Shapemol AI model: ShapeMol. From Ohio State University. Models Runnable Biology model Si Plm Protein/nucleotide language model: SI-PLM. From University of Pittsburgh. Models Runnable Biology model Signalp 6 0 AI model: SignalP 6.0. From Technical University of Denmark,ETH Zurich,University of Copenhagen,Stanford University,Stockholm University,European Bioinformatics Institute. Models Runnable Biology model Sigprofiler Sigprofiler renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Simplefold Protein structure prediction model: SimpleFold. From Apple. Models Runnable Biology model Sirius Sirius renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Skyline Skyline renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Smi Ted Smi Ted renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Sniffles2 Sniffles2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model So3lr Protein structure prediction model: SO3LR. From University of Luxembourg,Technische Universitat Berlin,Berlin Institute for the Foundations of Learning and Data,DeepMind,Max Planck Institute for Informatics,Korea University. Models Runnable Biology model Softmol Softmol renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Spark X Spark X renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Spatialde Spatialde renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Spider2 Protein structure prediction model: SPIDER2. From Griffith University,University of Iowa,Dezhou University. Models Runnable Biology model Spliceai Spliceai renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Spliceai Model Spliceai Model renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Spot AI model: SPOT. From Heinrich Heine University,Concordia University. Models Runnable Biology model Spotiflow Spotiflow processes image or spatial data into reviewable analysis artifacts while preserving file and metadata provenance. Models Runnable image or spatial data Spotrna Spotrna renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Squidpy Squidpy renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ss Plm Protein/nucleotide language model: SS-pLM. From Nostrum Biodiscovery,Barcelona Supercomputing Center,Institucio Catalana de Recerca i Estudis Avancçats. Models Runnable Biology model Ssa Embedding model: SSA. From Massachusetts Institute of Technology (MIT). Models Runnable Biology model St Align St Align renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable sequencing reads Stack Stack renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Stan Stan renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Stardist Fluo Nuclei Stardist Fluo Nuclei handles read alignment or aligned-read processing with captured inputs, parameters, and output artifacts for reproducibility review. Models Runnable image or spatial data Stargazer Stargazer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Stformer AI model: stFormer. From Shanghai Jiao Tong University,Chinese Academy of Sciences. Models Runnable Biology model Stofm Stofm renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Structure Informed Protein Language Model Protein/nucleotide language model: Structure-Informed Protein Language Model. From Mila - Quebec AI (originally Montreal Institute for Learning Algorithms),University of Montreal / Université de Montréal,IBM Research,HEC Montreal,CIFAR... Models Runnable Biology model Susie Susie renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Synteract AI model: SYNTERACT. From University of Delaware. Models Runnable Biology model Synthseg Synthseg renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Tabula Tabula renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Tangram Tangram renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Tape Transformer Protein/nucleotide language model: TAPE Transformer. From University of California (UC) Berkeley,Covariant,Google,Chan Zuckerberg Initiative. Models Runnable Biology model Tartarus Tartarus renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Tawfn AI model: TAWFN. From Northeastern University (China). Models Runnable Biology model Tdc Tdc renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Teddy Teddy renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Text2protein AI model: Text2Protein. From University of California San Diego,Brown University. Models Runnable Biology model Thermostable Protein Design AI model: Thermostable protein design. From Indraprastha Institute of Information Technology Delhi. Models Runnable Biology model Titan Pathology Titan Pathology renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable image or spatial data Tobias Tobias renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Totalvi Totalvi renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Tranception AI model: Tranception. From University of Oxford,Harvard Medical School,Cohere. Models Runnable Biology model Transbind Transbind applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Transcriptformer AI model: TranscriptFormer. From Chan Zuckerberg Initiative. Models Runnable Biology model Transfew AI model: TransFew. From University of Missouri. Models Runnable Biology model Tribe V2 Tribe V2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Trrosetta Protein structure prediction model: trRosetta. From Nankai University,University of Washington,Tianjin University,Harvard University. Models Runnable Biology model Txgemma Txgemma renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Txgemma 27b Protein/nucleotide language model: TxGemma 27B. From Google DeepMind,Google Research. Models Runnable Biology model Txgemma 2b Protein/nucleotide language model: TxGemma 2B. From Google DeepMind,Google Research. Models Runnable Biology model Txgemma 9b Protein/nucleotide language model: TxGemma 9B. From Google DeepMind,Google Research. Models Runnable Biology model Txgnn AI model: TxGNN. From Harvard Medical School,Harvard-MIT Program in Health Sciences and Technology,The Mount Sinai Hospital (New York),Broad Institute,Harvard Data Science Initiative,Harvard University,Stanford University. Models Runnable Biology model Uce Uce renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Udandti AI model: UdanDTI. From Tsinghua University. Models Runnable Biology model Udsmprot Protein/nucleotide language model: UDSMProt. From Fraunhofer Heinrich Hertz Institute. Models Runnable Biology model Ufold Ufold renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Ukbiobert Ukbiobert renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable sequence data Ukbioformer Ukbioformer renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable sequence data Ukbiozoi Ukbiozoi applies a biology model for prediction, embedding, scoring, design, or comparison inside a reproducible validation step. Models Runnable sequence data Uni Mol Uni Mol renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Uni Mol Molecular Model Embedding model: Uni-Mol Molecular Model. From Renmin University of China,DP Technology,AI for Science Institute, Beijing (AISI). Models Runnable Biology model Unirep Protein/nucleotide language model: UniRep. From Harvard University. Models Runnable Biology model Vespa Protein/nucleotide language model: Vespa. From Technical University of Munich. Models Runnable Biology model Vespag Protein/nucleotide language model: VespaG. From Technical University of Munich,Sorbonne University,Institute for Advanced Study,Université Paris Cité,Institut Universitaire de France (IUF). Models Runnable Biology model Vg Toolkit Vg Toolkit renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Viennarna Viennarna renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Vina GPU Vina GPU renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Virchow2 Virchow2 renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Vista 2d Single-cell analysis model: VISTA-2D. From NVIDIA. Models Runnable Biology model Waddington Ot Waddington Ot renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Wu Dao Wen Su Protein structure prediction model: Wu Dao - Wen Su. From Beijing Academy of Artificial Intelligence / BAAI. Models Runnable Biology model X 3DFlex X 3DFlex renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Xcms Xcms renders dimensionality-reduction views from matrices or embeddings for clustering, separation, and quality-control review. Models Runnable Biology model Yuel 2 AI model: Yuel 2. From Pennsylvania State University. Models Runnable Biology model Zymctrl Protein/nucleotide language model: ZymCTRL. From Basecamp Research,Friedrich-Alexander-Universität,University of Girona. Models Runnable Biology model