Models

scGPT

scGPT is a foundation model for single-cell genomics. Performs cell type annotation, gene network inference, and multi-omic integration. Trained on 33M cells.

RunnableBiology modelbowang-lab/scGPT | 1,589 stars

Catalog entry

About this entry

scGPT is a foundation model for single-cell genomics. Performs cell type annotation, gene network inference, and multi-omic integration. Trained on 33M cells.

CategoryModels
StatusRunnable
InputFlexible research data
OutputResults ready for review

Use in DarwinOmics

How to use it

Use this model when the submitted analysis depends on embeddings, predictions, scoring, generation, or model-backed comparison. Model output is treated as a reproducible analysis step, not as independent validation of a biological claim.