Visualizations
UMAP
UMAP reduces high-dimensional data to 2D or 3D for visualization. Standard for single-cell data. Preserves local and global structure better than t-SNE. Use after preprocessing and PCA to visualize cell populations.
RunnableVisualizationlmcinnes/umap | 8,216 stars
Catalog entry
About this entry
UMAP reduces high-dimensional data to 2D or 3D for visualization. Standard for single-cell data. Preserves local and global structure better than t-SNE. Use after preprocessing and PCA to visualize cell populations.
Use in DarwinOmics
How to use it
Use this visualization to regenerate an inspectable figure, report, or interactive view from supplied analysis artifacts so the rendered output can be compared with reported figures or tables.