Visualizations
GATK Haplotype Caller
GATK HaplotypeCaller calls germline SNPs and indels. Gold standard for germline variant calling. Requires aligned BAM and indexed reference genome.
Adapteraligned sequencing readsbroadinstitute/gatk | 1,970 stars
Catalog entry
About this entry
GATK HaplotypeCaller calls germline SNPs and indels. Gold standard for germline variant calling. Requires aligned BAM and indexed reference genome.
Use in DarwinOmics
How to use it
Use this visualization to regenerate an inspectable figure, report, or interactive view from supplied analysis artifacts so the rendered output can be compared with reported figures or tables.