Pipelines & Workflow Elements
Darwin Alleleexpression
Allele-specific gene expression analysis from RNA-seq data using phased variants and read-backed phasing.
Runnablealigned sequencing reads
Catalog entry
About this entry
Allele-specific gene expression analysis from RNA-seq data using phased variants and read-backed phasing. Steps: Step 1: fastqc; Step 2: star_align; Step 3: gatk_haplotypecaller; Step 4: phasing; Step 5: ase_counts; Step 6: report. Verticals: transcriptomics, genomics, population_genetics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.