Pipelines & Workflow Elements
Darwin BioNeMo Deepvariant
NVIDIA NIM-hosted Google DeepVariant for accurate germline variant calling from short reads.
Runnablealigned sequencing readsgoogle/deepvariant | 3,740 stars
Catalog entry
About this entry
NVIDIA NIM-hosted Google DeepVariant for accurate germline variant calling from short reads. Steps: Step 1: BAM Preparation & Region Extraction; Step 2: NIM DeepVariant Neural Network Calling; Step 3: VCF Postprocessing & QC. Verticals: genomics, variant_analysis, clinical_genomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.