Pipelines & Workflow Elements
Darwin Clipseq
Analysis of CLIP-seq and eCLIP data for mapping RNA-protein interactions and identifying binding sites of RNA-binding proteins.
RunnableWorkflow
Catalog entry
About this entry
Analysis of CLIP-seq and eCLIP data for mapping RNA-protein interactions and identifying binding sites of RNA-binding proteins. Steps: Step 1: fastqc; Step 2: umi_tools_extract; Step 3: trim_galore; Step 4: star_align; Step 5: umi_tools_dedup; Step 6: pureclip; Step 7: multiqc. Verticals: transcriptomics, epigenomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.