Darwin Createpanelrefs

Build panel of normals reference files for somatic variant calling from a cohort of normal samples. Steps: Step 1: fastqc; Step 2: bwa_mem; Step 3: gatk_markduplicates; Step 4: gatk_bqsr; Step 5: gatk_mutect2_pon; Step 6: multiqc. Verticals: oncogenomics, clinical_genomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.