Pipelines & Workflow Elements
Darwin Denovotranscript
De novo assembly of transcriptomes from RNA-seq reads using Trinity with QC, completeness assessment, and expression quantification.
RunnableWorkflow
Catalog entry
About this entry
De novo assembly of transcriptomes from RNA-seq reads using Trinity with QC, completeness assessment, and expression quantification. Steps: Step 1: fastqc; Step 2: trim_galore; Step 3: trinity; Step 4: transrate; Step 5: busco; Step 6: salmon_quant; Step 7: multiqc. Verticals: transcriptomics, genomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.