Darwin Detaxizer

Taxonomic decontamination of metagenomic samples by identifying and removing reads from unwanted organisms. Steps: Step 1: fastqc; Step 2: fastp; Step 3: kraken2_classify; Step 4: filter_reads; Step 5: fastqc_post; Step 6: multiqc. Verticals: metagenomics, microbial_genomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.