Darwin Genomeskim

Low-coverage genome skimming for organellar genome assembly, ploidy estimation, and repeat content Steps: Step 1: FastQC; Step 2: Adapter Trimming; Step 3: GetOrganelle Assembly; Step 4: Ploidy Estimation (smudgeplots); Step 5: Repeat Estimation (jellyfish/GenomeScope); Step 6: MultiQC Report. Verticals: genomics, plant_genomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.