Pipelines & Workflow Elements
Darwin Hgtseq
Detection and characterisation of horizontal gene transfer events from metagenomic and host sequencing data
RunnableWorkflow
Catalog entry
About this entry
Detection and characterisation of horizontal gene transfer events from metagenomic and host sequencing data Steps: Step 1: FastQC; Step 2: Host Genome Alignment; Step 3: Microbial Classification (Kraken2); Step 4: HGT Candidate Detection; Step 5: HGT Report. Verticals: metagenomics, microbial_genomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.