Pipelines & Workflow Elements
Darwin Lsmquant
Automated image analysis and cell quantification from light-sheet fluorescence microscopy data
Runnablealigned sequencing reads
Catalog entry
About this entry
Automated image analysis and cell quantification from light-sheet fluorescence microscopy data Steps: Step 1: Image Preprocessing (BigStitcher); Step 2: Brain Atlas Registration (elastix); Step 3: Cell Detection (cellpose); Step 4: Regional Cell Quantification; Step 5: LSMquant Report. Verticals: spatial_omics, neuroscience.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.