Darwin Marsseq

Processing pipeline for MARS-seq massively parallel single-cell RNA-seq data Steps: Step 1: FastQC; Step 2: Barcode Demultiplexing; Step 3: STAR Alignment; Step 4: UMI Counting (zUMIs); Step 5: Cell Filtering (Scanpy); Step 6: Dimensionality Reduction and Clustering; Step 7: MARS-seq Report. Verticals: single_cell, transcriptomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.