Pipelines & Workflow Elements
Darwin Mcmicro
End-to-end multiplexed tissue imaging pipeline: illumination correction, stitching, segmentation, and cell quantification
RunnableWorkflow
Catalog entry
About this entry
End-to-end multiplexed tissue imaging pipeline: illumination correction, stitching, segmentation, and cell quantification Steps: Step 1: Illumination Correction (BaSiC); Step 2: Image Stitching and Registration (ASHLAR); Step 3: Cell Segmentation (Mesmer); Step 4: Marker Quantification (MCQuant); Step 5: MCMICRO QC Report. Verticals: spatial_omics, oncogenomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.