Darwin Metapep

Metaproteomics pipeline for peptide identification, quantification, and functional annotation from environmental samples Steps: Step 1: Metaproteome Database Construction; Step 2: Peptide Search (Comet); Step 3: FDR Filtering (PeptideShaker); Step 4: Label-Free Quantification (FlashLFQ); Step 5: Functional Annotation (eggNOG-mapper); Step 6: MetaPep Report. Verticals: proteomics, metagenomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.