Darwin Metatdenovo

De novo assembly and annotation of metatranscriptomes from environmental RNA-seq data Steps: Step 1: FastQC; Step 2: Read Trimming; Step 3: Host Read Removal; Step 4: De Novo Metatranscriptome Assembly; Step 5: ORF Prediction (TransDecoder); Step 6: Functional Annotation (eggNOG-mapper); Step 7: Transcript Quantification (Salmon); Step 8: MetaTdenovo Report. Verticals: metagenomics, transcriptomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.