Pipelines & Workflow Elements
Darwin Methylong
Comprehensive CpG and non-CpG methylation calling from Oxford Nanopore and PacBio HiFi long-read data
Runnablealigned sequencing reads
Catalog entry
About this entry
Comprehensive CpG and non-CpG methylation calling from Oxford Nanopore and PacBio HiFi long-read data Steps: Step 1: Basecalling QC (NanoStat); Step 2: Alignment (minimap2); Step 3: Methylation Calling (modkit); Step 4: Haplotype Phasing (WhatsHap); Step 5: DMR Calling (DSS); Step 6: MethyLong Report. Verticals: epigenomics, rare_disease.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.