Pipelines & Workflow Elements
Darwin Mhcquant
Quantitative identification of MHC-presented peptides from LC-MS/MS data using Comet, Percolator, and MHCflurry for neoantigen discovery.
Runnablealigned sequencing reads
Catalog entry
About this entry
Quantitative identification of MHC-presented peptides from LC-MS/MS data using Comet, Percolator, and MHCflurry for neoantigen discovery. Steps: Step 1: raw_convert; Step 2: comet_search; Step 3: percolator; Step 4: mhcflurry; Step 5: report. Verticals: immunogenomics, proteomics, oncogenomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.