Darwin Molkart

Single-molecule spatial transcriptomics analysis pipeline for multiplexed tissue imaging, spot calling, and cell segmentation. Steps: Step 1: image_preprocess; Step 2: spot_calling; Step 3: cell_segmentation; Step 4: cell_assignment; Step 5: multiqc. Verticals: spatial_transcriptomics, single_cell.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.