Pipelines & Workflow Elements
Darwin Nascent
Genome-wide analysis of nascent RNA transcription using GRO-seq or PRO-seq for studying active transcription and RNA Pol II dynamics.
RunnableWorkflow
Catalog entry
About this entry
Genome-wide analysis of nascent RNA transcription using GRO-seq or PRO-seq for studying active transcription and RNA Pol II dynamics. Steps: Step 1: fastqc; Step 2: trim_galore; Step 3: bowtie2; Step 4: samtools_sort; Step 5: grohmm; Step 6: multiqc. Verticals: transcriptomics, epigenomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.