Darwin Oncoanalyser

Comprehensive somatic cancer genome analysis: purity/ploidy, copy number, structural variants, signatures, and tissue of origin Steps: Step 1: BAM Input Validation; Step 2: Allele Balance (AMBER); Step 3: Copy Number Ratio (COBALT); Step 4: Purity/Ploidy (PURPLE); Step 5: SV Annotation and Fusion (LINX); Step 6: Tissue of Origin (CUPPA); Step 7: Viral Integration (VIRUSBreakend); Step 8: OncoAnalyser Report. Verticals: oncogenomics, clinical_genomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.