Darwin Pacvar

Comprehensive variant calling from PacBio HiFi long reads: SNVs, indels, SVs, repeat expansions, and phasing Steps: Step 1: PacBio Alignment (pbmm2); Step 2: SNV/Indel Calling (DeepVariant); Step 3: SV Calling (pbsv); Step 4: Tandem Repeat Genotyping (TRGT); Step 5: Variant Phasing (HiPhase); Step 6: Variant Annotation (VEP); Step 7: MultiQC Report. Verticals: genomics, clinical_genomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.