Darwin Pangenome

Build and analyse pangenome variation graphs from multiple genome assemblies using PGGB and odgi. Steps: Step 1: seqwish; Step 2: smoothxg; Step 3: odgi_build; Step 4: gfaffix; Step 5: vg_deconstruct; Step 6: multiqc. Verticals: comparative_genomics, genomics, population_genetics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.