Darwin Pgdb

Proteogenomics database generation from RNA-seq, variants, and reference proteomes for custom protein search databases. Steps: Step 1: Download Ensembl proteome; Step 2: VCF to protein database; Step 3: cBioPortal mutations to protein DB; Step 4: Merge protein databases; Step 5: Validate protein database. Verticals: proteomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.