Darwin Phaseimpute

Haplotype phasing and genotype imputation from low-coverage WGS using GLIMPSE2 or BEAGLE Steps: Step 1: BAM QC (samtools); Step 2: GLIMPSE2 Chunk Reference Panel; Step 3: GLIMPSE2 Phase (per chunk); Step 4: GLIMPSE2 Ligate Chunks; Step 5: BCFtools Imputation Stats; Step 6: MultiQC Report. Verticals: population_genomics, clinical_genomics.

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.