Pipelines & Workflow Elements
Darwin Phyloplace
Phylogenetic placement of query sequences onto a reference tree using EPA-ng or pplacer for outbreak and surveillance analysis
RunnableWorkflow
Catalog entry
About this entry
Phylogenetic placement of query sequences onto a reference tree using EPA-ng or pplacer for outbreak and surveillance analysis Steps: Step 1: Query Sequence Validation; Step 2: HMMER Profile Alignment; Step 3: Merge with Reference Alignment (MAFFT); Step 4: Phylogenetic Placement (EPA-ng); Step 5: Placement Analysis (GAPPA); Step 6: PhyloPlace Report. Verticals: microbial_genomics, population_genomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.