Pipelines & Workflow Elements
Darwin Smrnaseq
Small RNA-seq analysis including QC, trimming, miRNA quantification, novel miRNA discovery, and differential expression.
RunnableWorkflow
Catalog entry
About this entry
Small RNA-seq analysis including QC, trimming, miRNA quantification, novel miRNA discovery, and differential expression. Steps: Step 1: fastqc; Step 2: trim_galore; Step 3: bowtie; Step 4: mirtrace; Step 5: mirdeep2; Step 6: multiqc. Verticals: transcriptomics, epigenomics.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.