Pipelines & Workflow Elements
Darwin Squidpy Tool
Spatial molecular data analysis with Squidpy: spatial statistics, neighborhood enrichment, co-occurrence, and ligand-receptor interactions
RunnableWorkflow
Catalog entry
About this entry
Spatial molecular data analysis with Squidpy: spatial statistics, neighborhood enrichment, co-occurrence, and ligand-receptor interactions Steps: Step 1: Load Spatial Transcriptomics Data; Step 2: Spatial Statistics and Interaction Analysis; Step 3: Export Results and Spatial Plots. Verticals: spatial_transcriptomics, single_cell.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.