Pydeseq2

Pydeseq2 supports differential analysis from expression matrices, preserving effect sizes, test statistics, and result tables for comparison. In DarwinOmics it is cataloged with expression matrices as input and expression matrices as output, so reviewers can trace how the regenerated artifact was produced and compare it with the submitted analysis.

Use in DarwinOmics

How to use it

Use this tool to reproduce a concrete analysis step from supplied inputs, captured parameters, and versioned outputs, then compare the regenerated artifacts against the submitted result record.