Pipelines & Workflow Elements

Sarek Germline GATK4

Germline variant calling using GATK4 HaplotypeCaller.

RunnableWorkflowbroadinstitute/gatk | 1,970 stars

Catalog entry

About this entry

Germline variant calling using GATK4 HaplotypeCaller.

CategoryPipelines & Workflow Elements
StatusRunnable
InputFlexible research data
OutputResults ready for review

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.