Pipelines & Workflow Elements

Sarek Somatic

Somatic variant calling using GATK Mutect2 for tumor-normal pairs.

RunnableWorkflow

Catalog entry

About this entry

Somatic variant calling using GATK Mutect2 for tumor-normal pairs.

CategoryPipelines & Workflow Elements
StatusRunnable
InputFlexible research data
OutputResults ready for review

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.