Pipelines & Workflow Elements

WGS

WGS variant calling with BWA-MEM2 alignment, duplicate marking, BQSR, and GATK HaplotypeCaller.

Runnablesequencing reads

Catalog entry

About this entry

WGS variant calling with BWA-MEM2 alignment, duplicate marking, BQSR, and GATK HaplotypeCaller.

CategoryPipelines & Workflow Elements
StatusRunnable
Inputsequencing reads
Outputvariant calls

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.