Pipelines & Workflow Elements
WGS
WGS variant calling with BWA-MEM2 alignment, duplicate marking, BQSR, and GATK HaplotypeCaller.
Runnablesequencing reads
Catalog entry
About this entry
WGS variant calling with BWA-MEM2 alignment, duplicate marking, BQSR, and GATK HaplotypeCaller.
Use in DarwinOmics
How to use it
Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.