Pipelines & Workflow Elements

WGS GATK4

GATK4 best practices pipeline for WGS.

Runnablesequencing readsbroadinstitute/gatk | 1,970 stars

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About this entry

GATK4 best practices pipeline for WGS.

CategoryPipelines & Workflow Elements

StatusRunnable

Inputsequencing reads

Outputvariant calls

Use in DarwinOmics

How to use it

Use this workflow element when the submitted analysis needs a multi-step execution path, imported workflow, Darwinomics wrapper, or workflow-scale comparison rather than a single module.