Tools

GATK Mutect2

GATK Mutect2 calls somatic SNPs and indels from tumor-normal or tumor-only data. Standard for cancer variant calling.

Runnablealigned sequencing readsbroadinstitute/gatk | 1,970 stars

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About this entry

GATK Mutect2 calls somatic SNPs and indels from tumor-normal or tumor-only data. Standard for cancer variant calling.

CategoryTools

StatusRunnable

Inputaligned sequencing reads

Outputvariant calls

Use in DarwinOmics

How to use it

Use this tool to reproduce a concrete analysis step from supplied inputs, captured parameters, and versioned outputs, then compare the regenerated artifacts against the submitted result record.