Tools

Hisat2 Align

HISAT2 aligns RNA-seq reads using a hierarchical index. Uses ~8GB RAM vs 32GB for STAR. Use HISAT2 when memory is limited or as an alternative to STAR.

Runnablesequencing readsDaehwanKimLab/hisat2 | 539 stars

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About this entry

HISAT2 aligns RNA-seq reads using a hierarchical index. Uses ~8GB RAM vs 32GB for STAR. Use HISAT2 when memory is limited or as an alternative to STAR.

CategoryTools

StatusRunnable

Inputsequencing reads

Outputaligned sequencing reads

Use in DarwinOmics

How to use it

Use this tool to reproduce a concrete analysis step from supplied inputs, captured parameters, and versioned outputs, then compare the regenerated artifacts against the submitted result record.