Tools

Leiden

Leiden clustering identifies cell populations in single-cell data using community detection on a KNN graph. Produces more well-defined clusters than Louvain. Use after UMAP to identify cell types.

RunnableAnalysis tool

Catalog entry

About this entry

Leiden clustering identifies cell populations in single-cell data using community detection on a KNN graph. Produces more well-defined clusters than Louvain. Use after UMAP to identify cell types.

CategoryTools
StatusRunnable
InputFlexible research data
OutputResults ready for review

Use in DarwinOmics

How to use it

Use this tool to reproduce a concrete analysis step from supplied inputs, captured parameters, and versioned outputs, then compare the regenerated artifacts against the submitted result record.