Tools

Minimap2 Align

Minimap2 aligns long reads (PacBio, Oxford Nanopore) to a reference genome. Optimized for long, noisy reads. For short Illumina reads, BWA-MEM is generally more accurate.

Runnablesequencing reads

Catalog entry

About this entry

Minimap2 aligns long reads (PacBio, Oxford Nanopore) to a reference genome. Optimized for long, noisy reads. For short Illumina reads, BWA-MEM is generally more accurate.

CategoryTools
StatusRunnable
Inputsequencing reads
Outputaligned sequencing reads

Use in DarwinOmics

How to use it

Use this tool to reproduce a concrete analysis step from supplied inputs, captured parameters, and versioned outputs, then compare the regenerated artifacts against the submitted result record.