Tools
Segmentation To Singlecell
Converts spatial segmentation masks into a single-cell expression matrix. Maps segmentation regions to gene expression spots.
Runnablesequencing reads
Catalog entry
About this entry
Segmentation To Singlecell supports single-cell analysis, annotation, or embedding workflows with reproducible matrix and metadata handling. In DarwinOmics it is cataloged with sequencing reads as input and reviewable analysis output as output, so reviewers can trace how the regenerated artifact was produced and compare it with the submitted analysis.
Use in DarwinOmics
How to use it
Use this tool to reproduce a concrete analysis step from supplied inputs, captured parameters, and versioned outputs, then compare the regenerated artifacts against the submitted result record.